Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2 113 3e-20 seq7 107 1e-18 >seq2 Length=2907307 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || ||||||||| | || | || || ||||| || || || || Sbjct 2173204 TCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTCCTCAAGCTGCTTGCCCGCGAAG 2173145 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||||| |||||| Sbjct 2173144 ATAAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTG 2173085 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || |||| || || || || |||||||| |||||||| Sbjct 2173084 TCGATGGTGTCGGAGGACTCGACCTCGAGCGTGATCGTCTTCCCCGTGAGCGTCTTCACG 2173025 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 2173024 AAGATCTGCATA 2173013 >seq7 Length=1356190 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || | | || |||| || ||||| || || ||||| Sbjct 309811 TCCTTCTGAATGTTGTAGTCGGACAACGTGCGCCCATCCTCAAGCTGCTTGCCAGCAAAG 309870 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| ||||| Sbjct 309871 ATAAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGAC---- 309926 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | |||||| || | ||| ||||| || |||||||| ||||| Sbjct 309927 GTTGTCGATGGTGTCCGACGACTCAACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTT 309986 Query 34967 CACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 309987 AACGAAGATCTGCAT 310001 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || ||| | || | || |||||||| || ||||| || Sbjct 309074 TCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAG 309133 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | |||||||| || |||||| |||||| Sbjct 309134 ATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCCTGGATCTTCGCCTTGACGTTG 309193 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || |||||| |||| || || || || || || | ||||| || Sbjct 309194 TCGATCGTATCGGAGGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAACGTCTTGACG 309253 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 309254 AAGATTTGCATA 309265 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| |||||||| || ||||| || Sbjct 309530 TCCTTCTGGATGTTGTAGTCGGAGAGCGTACGACCATCCTCCAGCTGCTTCCCGGCGAAG 309589 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| || ||| Sbjct 309590 ATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTG 309649 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || ||| || |||| ||| ||||| || || || | ||||| || Sbjct 309650 TCGATCGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTCAAGGTCTTGACG 309709 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 309710 AAGATCTGCATA 309721 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || ||||| || | || | || || ||||| || || || || Sbjct 309302 TCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTCCCAGCGAAG 309361 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||||| || || || Sbjct 309362 ATGAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCAC--AT 309419 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| | ||| || || | ||| || || || |||||||| ||||| Sbjct 309420 --TGTCGATGGTGTCAGATGACTCGACCTCCAGGGTGATCGTCTTGCCCGTGAGGGTCTT 309477 Query 34967 CACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 309478 GACGAAGATCTGCAT 309492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632690011440