Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq8 104 2e-17 >seq8 Length=1038518 Score = 104 bits (114), Expect = 2e-17 Identities = 231/345 (67%), Gaps = 4/345 (1%) Strand=Plus/Minus Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100 ||||||||||||| |||| || |||||| |||| |||| || | || | |||| || Sbjct 536884 CTTTGGGGTTCCACGCGCTCATGATGATTCGCCGGTCTGTGGGATCGTGCTTGATTTTGT 536825 Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGC--CCTCATGTCCGT 30158 | | | |||||||||| || ||| || | ||||| || || ||| || | Sbjct 536824 GGATGCACTCGCGCAGCTGATCGACGCCCTGGCCAGTATAGTCCGCGTCCGCAT--CCTT 536767 Query 30159 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30218 ||||||||| ||||| || | ||| ||||| ||||| || || || |||||||||||| Sbjct 536766 GTACTCTGCGCCGAAGTGTCGCCATTGGAAGCCGTATACGGGACCGAGGTCTCCCTCTCT 536707 Query 30219 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30278 | ||| ||| || | | || | || || | || || || ||||||||||| | Sbjct 536706 ACGATGCCCGAGCCCGCGCCCTTCGAGGAACTCCTTCGATCCATTTCCGTCCCAGATCGT 536647 Query 30279 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30338 ||| || ||||| | | |||| ||| | || || ||||| ||||| || Sbjct 536646 GACCTTTTTGCGCGAGAGAACGGTAGAGTCGGTGCAACCGTGGATAAACCAGAGCAGTTC 536587 Query 30339 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 ||| || | | | | || || |||||| |||| |||||| Sbjct 536586 CTCTACTATCCCGCGCAAGAATGTCCGCTTGGTAGTGATGAGGGG 536542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616454593790