Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 246 6e-60 seq21 205 2e-47 seq3 192 1e-43 seq8 158 2e-33 >seq1 Length=3010126 Score = 246 bits (272), Expect = 6e-60 Identities = 331/461 (72%), Gaps = 0/461 (0%) Strand=Plus/Minus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||||||||| || |||||| ||||||||| || ||||||||| ||||||||||| ||| Sbjct 2094677 GCAGGCAAACTCGGTGTGCATGCCTTCGTCGCGACTGATGAGCTCGTTGGAGAAGGTGAG 2094618 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||||||||| | ||| | || || |||||||| || || ||||| || ||||||||||| Sbjct 2094617 ACCAGGCATAAGCCCGCGCTTCTTCAGCCAGAAGATAGCGGCGAAGGACCCAGAGAAGAA 2094558 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 || || ||||| || |||||||| ||| | || |||| | | ||||| || Sbjct 2094557 TATCCCTTCCACAGCGGCGAACGCCACGAGTCGTTCCGCGAACGTCGATGATTTGTCAGA 2094498 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 | |||| |||||||||||| ||||| ||||||||| || || ||||| ||||| Sbjct 2094497 GTTCCATCTAAGCGCCCAGTCCGCCTTGCGCTTGATGCACGGAATTGTCTCGATGGCAGC 2094438 Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACAT 48429 |||||| | | | ||| | |||| | ||||| || || | ||| | Sbjct 2094437 GAAGAGGTGGTCTCGCTCCTGAGGGTCCTTGATGTAGGTGTCGATGAGTAGGGAGTAGGT 2094378 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 || ||||| | ||||| || |||||||| ||||||||| | ||||| | | Sbjct 2094377 TTCCGAGTGAATGTTCTCCATCATTATCTGGAAGCCGTAGAAGCAGCGCGCCTCCGCCGC 2094318 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||| || || |||| || | ||| | || ||||| ||||| |||||||| || || || Sbjct 2094317 CTGAACCTCGTTGGAAAAGCGCTCAACGAGGTTCTCGTTGACAATCCCATCGGAGGCGGC 2094258 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGT 48590 ||||| || ||||| ||||| | |||||||| ||||||| Sbjct 2094257 GAAGAAAGCCAGGACGTGTTTGATAAAATGGCGTTCGTTGT 2094217 Score = 84.2 bits (92), Expect = 4e-11 Identities = 124/173 (72%), Gaps = 12/173 (7%) Strand=Plus/Minus Query 47858 TTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTG 47917 ||||| ||||| || |||||||| | || |||||| | ||||||||| |||||||||| Sbjct 2094999 TTCTCGAAGAAATTGGTCTTCCCTTGCAGCGAGATCATATCCATGAAGTCGAAGGGGTTG 2094940 Query 47918 GGTGTGTTATACACC----CGTGTC--AGGCCCATCTGTTCCAGCAGGTGATCCGCGACG 47971 | | || || | | | |||| |||| | | | |||| || || |||||| Sbjct 2094939 GTAGCATTGTAGATCTTGTCCTGTCCTAGGC---TGTATAACAGCCGG---TCGGCGACG 2094886 Query 47972 TACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGG 48024 | || ||||||| | |||||||| | ||||||||| || ||||| ||||| Sbjct 2094885 AATTCTATGTATTGTCGCATGAGGGCGGCGTTCATGCCAATTAGGGAGACGGG 2094833 >seq21 Length=547483 Score = 205 bits (226), Expect = 2e-47 Identities = 387/566 (68%), Gaps = 9/566 (2%) Strand=Plus/Minus Query 48125 AGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAG 48184 |||| |||||||||||| | |||| ||| ||||| || |||||||| |||| ||||| Sbjct 165075 AGCAGGCAGGCAAAGTCGGTATGCATGCCCTCGTCGCGCGTGATGAGCTCGTTCGAGAAC 165016 Query 48185 CAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAG 48244 | |||||||| | ||||| || || ||||| || || ||| || ||| ||| Sbjct 165015 GTCAACCCAGGCATCAACCCCCGCTTCTTCAGCCAAAAGATGCTCGCAAAGCTGCCCGAG 164956 Query 48245 AAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAG---AAGCGTTC 48301 ||||| || |||||||| |||| ||||||| |||||| | || |||| |||| | Sbjct 164955 AAGAAAATCCCCTCCACCGCCGAGAACGCGATGAGCC-GTATCGCAAAGCTCGAGCG--C 164899 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 || | ||||||| |||||||| || |||||||| | ||| || || ||||| Sbjct 164898 CGATCCGCGATCCAGCGCAGCGCCCACTCCGCCTTCTTGCGCACGCACGGGATGGTCTCG 164839 Query 48362 ATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTT 48421 | ||| || ||| | ||| || | | ||| | || || || || Sbjct 164838 ACGGCGTTGAGGAGGAACGTGCGCTGGGCGGGGTCGCGGATGTACGTGTCGATGAGGAGG 164779 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 | |||| |||| |||||||| ||||| || ||||||||| ||||||||| | ||| Sbjct 164778 GAGTACGTCTCCGAGTGCACGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCC 164719 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCT 48541 || |||| || || | |||| | ||||| ||||| ||||| || || || Sbjct 164718 TCGGGGACCTTGACCTCGCCGCAGAAGCGGGTGAGCAGGTTCTCGTTGACGATGCCGTCG 164659 Query 48542 GAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGG---GTGAGA 48598 || || || |||||||| ||||| || | ||| || |||||||||| | || | Sbjct 164658 GAGGCGGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGCCGCTCGTTGTCGTTCATGCGC 164599 Query 48599 GCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCG 48658 | | |||| | || | ||| ||| ||||||| ||||| | |||||||| ||||| Sbjct 164598 TCTTCCCAGTCGTGGAGGTCCTTGGAGAGGTCCATCTCTTCTGCGGTCCAGAAAGACGCT 164539 Query 48659 AGTGCTTTTTTGTACATGCCCCATAT 48684 | |||| ||||||||| |||| || Sbjct 164538 TCTTCTTTCTTGTACATGGCCCAGAT 164513 >seq3 Length=1901115 Score = 192 bits (212), Expect = 1e-43 Identities = 380/557 (68%), Gaps = 9/557 (2%) Strand=Plus/Plus Query 48125 AGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAG 48184 |||| |||||||||||| |||||| || ||||| || |||||||| ||||||||||| Sbjct 1719987 AGCAGGCAGGCAAAGTCGGTGTGCATCCCCTCGTCGCGAGTGATGAGCTCGTTGGAGAAG 1720046 Query 48185 CAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAG-AGCCAGA 48243 |||||| ||||||| || | || ||||||||||| | ||| | |||| ||| || Sbjct 1720047 GTGAGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGA-TGCTGGCAAAGCTGCCGGA 1720105 Query 48244 GAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG--CGTTC 48301 ||||||||| ||||| || || ||||| ||| ||| | ||||| |||| || || Sbjct 1720106 GAAGAAGATACCCTCGACGGCGGCGAAAGCGACGAGGCGGATACCGAAGGAAGAACGGTC 1720165 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 ||| |||||| || ||||| | ||||| | || || || || ||||| Sbjct 1720166 --GTCGTTGATCCACCGGAGAGCCCACTGCGCCTTGCGCGCGACACAGGGGATGGTCTCG 1720223 Query 48362 ATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTT 48421 | ||| |||||| | || || ||| | || || | ||||| || || Sbjct 1720224 ACGGCGTTGAAGAGATGCTCGCGCTCGGCGGCCTCGCGGATGTAGGTGTCGATGAGAAGG 1720283 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 | ||| |||| ||||| | ||||| || ||||||||| ||||||||| | ||| Sbjct 1720284 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCC 1720343 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCT 48541 || || || || || ||||| | ||| || || ||||| ||||| || || || Sbjct 1720344 TCGGGGACTTGGACCTCGCCAGAGAAACGCTCGAGGAGGTTCTCGTTGACGATACCGTCG 1720403 Query 48542 GAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGG---GTGAGA 48598 || || || |||||||| ||||| || | ||| |||||||| |||| | || | Sbjct 1720404 GAGGCGGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGGCGCTCATTGTCGTTCATGCGG 1720463 Query 48599 GCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCG 48658 | |||| | || | ||| || ||| |||| || || |||||||||| ||||| Sbjct 1720464 TTCTGCCAGTCGTGAAGGTCCTTCGACAGATCCATCTCCTCGGCAGTCCAGAACGACGCC 1720523 Query 48659 AGTGCTTTTTTGTACAT 48675 || || |||||||| Sbjct 1720524 TCAGCCTTCTTGTACAT 1720540 >seq8 Length=1038518 Score = 158 bits (174), Expect = 2e-33 Identities = 337/493 (68%), Gaps = 19/493 (4%) Strand=Plus/Minus Query 213112 TCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGG 213171 ||||| ||||| ||||||||||| ||| | |||| | |||||||||| | | Sbjct 199911 TCACGCCCCACAGGTCAAACTGCAGCTGGCCCTGGCTCGCCGGGCTGCCCTCCCACGTCT 199852 Query 213172 AGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCT-GCAGGGCAGCGTAGTAGATG 213230 ||| ||||| | ||||| ||| || || ||||||||| ||| || |||| |||||| Sbjct 199851 CGTACGGGCCCTCCTCCTCGGCGAGGTCAGAGGACGCCTCGCA-CGCTGCGTGGTAGATC 199793 Query 213231 GTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATG 213290 || || || |||| | |||| |||| ||||| || || ||| ||||| || | Sbjct 199792 GTCTCGAAGATCTGCTTGTTCAGCTCGCGCGCCTCGGGCGAGTCGAACGGCATGCGCA-G 199734 Query 213291 CG-TTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTT 213349 || || | || || || |||||||| |||| || ||||| | ||| | || ||| Sbjct 199733 CGCCATAAAGGCGTCGGCGAGGCCCTGGACACCGAGACCAATGGGGCGGTGGCGCATGTT 199674 Query 213350 AGACTTGGAGCACTCCTC---CAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTT 213406 || | | | |||| | ||||| ||||| ||||||||||||||| ||||| Sbjct 199673 CGA---GCGCCTCGCCTCGGGGACCGGGTAGTAGTTGACGTCGATGATCTTGTTCAGGTT 199617 Query 213407 GCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTC 213466 ||| ||| |||| || ||||| | | ||| | | | ||| |||| | ||||| Sbjct 199616 GCGAGTGACCACCTTCGTGACGTCGTGCAGCTTC------TGGAAGTCGTACACGCCGTC 199563 Query 213467 CTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGT 213525 | | || ||||| |||| | |||||||||||| || || ||| | | ||| Sbjct 199562 GCGGATGAAGGTGGGCAGCGCGAGGGAGGCCAGGTTGCAGACAGCGGTCTCATCGGGAG- 199504 Query 213526 CTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGT 213585 | | |||||| |||||||| ||||||| |||| | ||| || || |||||||| | Sbjct 199503 CAGAGTACTCGATGATCTCCGTGCACAAGTTGGACGACTTGATTGTACCGAGGTTCTGCT 199444 Query 213586 GGTTTGACTTTGC 213598 |||| || ||||| Sbjct 199443 GGTTCGA-TTTGC 199432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931530121843200