Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 172 1e-37 seq1 141 2e-28 seq8 134 3e-26 >seq3 Length=1901115 Score = 172 bits (190), Expect = 1e-37 Identities = 380/567 (67%), Gaps = 11/567 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||||||| | || |||||| ||||| ||||| |||||| Sbjct 1720549 ATCTGGCAAATGTACAAGAAGGCTGAGGCGTCGTTCTGGACTGCCGAGGAGATGGATCTG 1720490 Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 | |||||| | ||| |||| | ||| | | | | | |||| || || || Sbjct 1720489 TCGAAGGACCTTCACGACTGGCAGAACCGCATGAACGACA-ATGAGCGCCACTTCATCTC 1720431 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || ||||| || ||||| || |||||||| || |||| | Sbjct 1720430 CCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGTCAACGAGAACCTCCTCGAGCG 1720371 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||| | | || || || | ||||| || ||||||||||||||||| || Sbjct 1720370 TTTCTCTGGCGAGGTCCAAGTCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGAT 1720311 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || || | ||||| ||| || || ||||| || || ||||| || | Sbjct 1720310 GGAGAACATCCACTCCGAGACCTACTCC---CTTCTCATCGACACCTACATCCGCGAGGC 1720254 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 ||||||| | || | || || ||| ||||| ||| ||| | || | | ||||| Sbjct 1720253 CGCCGAGCGCGAGCATCTCTTCAACGCCGTCGAGACCATCCCCTGTGTCGCGCGCAAGGC 1720194 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 || |||||| | |||||||||| | | | || | || || || || || || Sbjct 1720193 GCAGTGGGCTCTCCGGTGGATCAACGACGACCGTTCTTCCTTCGGTATCCGCCTCGTCGC 1720134 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 || || || || ||||| ||||| ||| ||| ||||| ||||||||||||||| Sbjct 1720133 TTTCGCCGCCGTCGAGGGTATCTTCTTCTCCGGCAGCTTTGCCAGCATCTTCTGGCTCAA 1720074 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || ||||||||| || ||| |||||||||||||||| | |||||||| Sbjct 1720073 GAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCACTCGCGACGAGGG 1720014 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCT 26036 | |||| || |||||||||||||| Sbjct 1720013 GATGCACACCGACTTTGCCTGCCTGCT 1719987 >seq1 Length=3010126 Score = 141 bits (156), Expect = 2e-28 Identities = 314/467 (67%), Gaps = 8/467 (2%) Strand=Plus/Plus Query 25574 ACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGA 25633 |||| | |||||| |||| |||| |||| ||||| || ||||| ||||| || || | Sbjct 2094220 ACGAACGCCATTTTATCAAACACGTCCTGGCTTTCTTCGCCGCCTCCGATGGGATTGTCA 2094279 Query 25634 ACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCT 25693 ||||||| || ||| | || ||| || || ||| | |||||| || |||| Sbjct 2094280 ACGAGAACCTCGTTGAGCGCTTTTCCAACGAGGTTCAGGCGGCGGAGGCGCGCTGCTTCT 2094339 Query 25694 ACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG- 25752 |||| |||||||| || || || | ||||| || || || || || || Sbjct 2094340 ACGGCTTCCAGATAATGATGGAGAACATTCACTCGGAAACCTACTCC---CTACTCATCG 2094396 Query 25753 --ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATAC 25810 || ||||| | ||| ||| |||| | || || | |||||||||| || | Sbjct 2094397 ACACCTACATCAAGGACCCTCAGGAGCGAGACCACCTCTTCGCTGCCATCGAGACAATTC 2094456 Query 25811 CCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACG 25869 | |||||||| | |||||| ||||| | | |||| | | | || | | | ||| Sbjct 2094457 CGTGCATCAAGCGCAAGGCGGACTGGGCGCTTAGATGGAACT-CTGACAAATCATCGACG 2094515 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || | || || || || || || || |||||||| || || || ||| || || || Sbjct 2094516 TTCGCGGAACGACTCGTGGCGTTCGCCGCTGTGGAAGGGATATTCTTCTCTGGGTCCTTC 2094575 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || || ||||||||||| ||| || ||| ||||| || || ||| ||||||||| Sbjct 2094576 GCCGCTATCTTCTGGCTGAAGAAGCGCGGGCTTATGCCTGGTCTCACCTTCTCCAACGAG 2094635 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 |||||||| | ||||| || | |||| || ||||||||||| || Sbjct 2094636 CTCATCAGTCGCGACGAAGGCATGCACACCGAGTTTGCCTGCCTCCT 2094682 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 26152 GGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGC 26211 ||||||||| | |||||| | |||||||| || | || ||||||| ||| | | | Sbjct 2094848 GGCATGAACGCCGCCCTCATGCGACAATACATAGAATTCGTCGCCGACCGGCTGTTATAC 2094907 Query 26212 CAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATA 26271 || |||| | || |||||| | | | ||||| |||||||| ||||| | || Sbjct 2094908 AGCCTAGGACAGGACAAGATCTACAATGCTACCAACCCCTTCGACTTCATGGATATGATC 2094967 Query 26272 TCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309 ||| || ||||||||||||| ||||| || ||| |||| Sbjct 2094968 TCGCTGCAAGGGAAGACCAATTTCTTCGAGAAGCGGGT 2095005 >seq8 Length=1038518 Score = 134 bits (148), Expect = 3e-26 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAAGT 221481 || ||||||||||| ||||| |||||| |||||| || ||| | |||||||| || Sbjct 199807 GCTGCGTGGTAGATCGTCTCGAAGATCTGCTTGTTCAG-CTCGCGCGCCTCGGGCGAGTC 199749 Query 221482 GAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGG 221541 ||| ||||| |||||| | |||| ||||||| || ||||| || |||| ||| ||||| Sbjct 199748 GAACGGCATGCGCAGCGCCATAAAGGCGTCGGCGAGGCCCTGGACACCGAGACCAATGGG 199689 Query 221542 CCTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGTTGACGTCGATCA 221600 | ||| | | |||| || ||| | ||| || || || || || ||||||||||||| | Sbjct 199688 GCGGTGGCGCATGTTCGA-GCGCCTCGCCTCGGGGACCGGGTAGTAGTTGACGTCGATGA 199630 Query 221601 GATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGG 221650 ||||| ||||| |||||| || || || ||| |||||||||| Sbjct 199629 TCTTGTTCAGGTTGCGAGTGACCACCTTCGTGACGTCGTGCAGCTTCTGG 199580 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 222044 AAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCG 222103 |||||||| |||||||| || || | || || || | || |||||||||||| |||| Sbjct 199104 AAGAGGTCAGGGATCCAAAGGGCGTAGAACAGGTCGCGGGCACGCTGCTCCTCCTTGCCG 199045 Query 222104 TTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACG 222163 | ||| ||||||| || | ||||| || | ||| | |||||||||||| || |||| Sbjct 199044 TGGTTCTTCCTCAAGTCGAGGAACTCGAAGACGTCGGGGTGCCACGGCTCGAGGTAGATA 198985 Query 222164 GCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 || | || || || ||||||||||||||||| || || Sbjct 198984 GCAAACGCCCCCGGACGCTTGTTGCCACCCTGGTCGAC 198947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842129571200