Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq7 109 5e-19 seq2 98.7 9e-16 >seq7 Length=1356190 Score = 109 bits (120), Expect = 5e-19 Identities = 151/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || ||| | ||||| || || || |||||||| || || || || Sbjct 309264 ATGCAAATCTTCGTCAAGACGTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCCTCC 309205 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| || || || || || |||||||| || Sbjct 309204 GATACGATCGACAACGTCAAGGCGAAGATCCAGGATAAGGAGGGCATTCCTCCCGACCAG 309145 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||||||||| | | | | || || || ||| Sbjct 309144 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACCCTCTCTGACTACAAC 309085 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGT 24912 ||||| ||||| ||||| || || |||||| Sbjct 309084 ATTCAGAAGGAGTCGACCCTTCACCTTGGT 309055 Score = 102 bits (112), Expect = 7e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || || || || || || || || || || || | | Sbjct 310001 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTTGAGTCGTCG 309942 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 309941 GACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 309882 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||||| |||||| | | | |||| || || ||| Sbjct 309881 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGCACGTTGTCCGACTACAAC 309822 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGTG 24913 ||||| ||||| ||||| || || || |||| Sbjct 309821 ATTCAGAAGGAGTCGACGCTGCATCTCGGTG 309791 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || ||||| || || || | Sbjct 309720 ATGCAGATCTTCGTCAAGACCTTGACCGGGAAGACCATCACCCTCGAGGTCGAGTCCTCA 309661 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 309660 GACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAG 309601 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| |||||||| |||||||||||| | | | || || || ||| Sbjct 309600 CAGCGCCTTATCTTCGCCGGGAAGCAGCTGGAGGATGGTCGTACGCTCTCCGACTACAAC 309541 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || || || ||| Sbjct 309540 ATCCAGAAGGAGTCTACCCTCCAC 309517 >seq2 Length=2907307 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || |||||||| || || || || Sbjct 2173014 ATGCAGATCTTCGTGAAGACGCTCACGGGGAAGACGATCACGCTCGAGGTCGAGTCCTCC 2173073 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || || || || Sbjct 2173074 GACACCATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 2173133 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || ||||| ||||| | | | | || ||||| ||| Sbjct 2173134 CAGCGCCTTATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGTACCCTTTCGGATTACAAC 2173193 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || || | ||| | || ||||||| || Sbjct 2173194 ATCCAGAAGGAGTCGACCCTCCATCTCGTGCTCCGTCTGCGCGGTGG 2173240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896306544400