Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq7 120 6e-22 seq2 84.2 4e-11 >seq7 Length=1356190 Score = 120 bits (132), Expect = 6e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| || || || || ||||| || || ||||| | Sbjct 309264 TACCACCGCGGAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCG 309323 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | |||||| || || || || ||||| ||||| || | || || || || | Sbjct 309324 AGAGAGTGCGACCGTCCTCGAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGCG 309383 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || |||||||| || || ||||| || || || ||| | || | Sbjct 309384 GGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATGGTGTCAGATGACTCGA 309443 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || ||||||||||| || | ||||| || || |||||||| Sbjct 309444 CCTCCAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 309492 Score = 116 bits (128), Expect = 7e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| || || || || ||||| || || || ||||| || | | |||||| || || || Sbjct 309061 GTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTG 309120 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || || || ||||| || | || || || ||||| || || |||||||| || ||||| Sbjct 309121 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCCTGGATCTT 309180 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || || || || |||||||| | || || || | || ||||||||||| || Sbjct 309181 CGCCTTGACGTTGTCGATCGTATCGGAGGACTCAACCTCGAGCGTGATCGTCTTGCCGGT 309240 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || || || ||||| Sbjct 309241 CAACGTCTTGACGAAGATTTGCAT 309264 >seq2 Length=2907307 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || ||||| || |||||||| || || || || || |||||||| | || || ||| Sbjct 2173345 CCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCGATCGTATCGGACGACTCGACCTCC 2173286 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||||||||| ||||||||||| || || |||||||| Sbjct 2173285 AACGTGATCGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 2173242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981824306677970