Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 246 4e-59 seq3 241 2e-57 seq21 188 1e-41 seq8 109 8e-18 >seq1 Length=3010126 Score = 246 bits (272), Expect = 4e-59 Identities = 389/545 (71%), Gaps = 17/545 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 |||||||| ||||| || |||| | || ||||||||||| | ||||| || || Sbjct 2094119 GATATGGGCTATGTAT-AAGCAGGCTCAAGCATCCTTTTGGACGTCGGAGGAAATCACCC 2094177 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCATCA 1455891 ||| |||| | | ||||| | || |||| |||| |||| |||||||| |||| Sbjct 2094178 TCGCATATGACATGCGCGACTGGACGGAACGACTGAACGACAACGAACGCCATTTTATCA 2094237 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 | |||||||| || ||| ||||||||| |||||| || || ||||||||| | | Sbjct 2094238 AACACGTCCTGGC-TTTCTTCGCCGCCTCCGATGGGATTGTCAACGAGAACCTCGTTGAG 2094296 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 |||||| || ||||| || | | ||||| || | || ||||| |||||||| Sbjct 2094297 CGCTTTTCCAACGAGGTTCAGGCGGCGGAGGCGCGCTGCTTCTACGGCTTCCAGATAATG 2094356 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||| ||||| ||||||||||| || || |||||||||||| |||||||||| Sbjct 2094357 ATGGAGAACATTCACTCGGAAACCTACTCCCTACTCATCGACACCTACATCAAGGACCCT 2094416 Query 1456072 GTCGAGAAGGACCACCTCTTTCGC-GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 ||| ||||||||| ||||| |||||||| || | |||| | | | ||||| Sbjct 2094417 CAGGAGCGAGACCACCTC-TTCGCTGCCATCGAGACAATTCCGTGCATCAAGCGCAAGGC 2094475 Query 1456131 CGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTC 1456187 ||||||||| | | |||| | |||| | ||||| || || || || ||| Sbjct 2094476 GGACTGGGCGCTTAGATGGAACTCTGACAA----ATCATCGAC-GTTCGCGGAACGACTC 2094530 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGG 1456246 || | || ||||| || || || || || ||||| || ||| ||| ||||| ||| Sbjct 2094531 GTGGCGTTCGCCGCTGTGGAAGGGATATTCTTCTCTGGGTCCTTCGCCGCTATCTTCTGG 2094590 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGA 1456306 || ||||||||||| || ||||| |||| || ||| |||||| | ||||||||||| Sbjct 2094591 CTGAAGAAGCGCGGGCTTATGCCTGGTC-TCACCTTCTCCAACGAGCTCATCAGTCGCGA 2094649 Query 1456307 CGAAG 1456311 ||||| Sbjct 2094650 CGAAG 2094654 >seq3 Length=1901115 Score = 241 bits (266), Expect = 2e-57 Identities = 389/544 (72%), Gaps = 19/544 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| || || ||||| ||||||||| | || | Sbjct 1720550 GATCTGGCAAATGTAC-AAGAAGGCTGAGGCGTCGTTCTGGACTGCCGAGGAGATGGATC 1720492 Query 1455835 T--CGGCG--CCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 | || | || |||| ||||| | ||| ||| |||| | |||||||| ||| Sbjct 1720491 TGTCGAAGGACCTTCACG----ACTGGCAGAACCGCATGAACGACAATGAGCGCCACTTC 1720436 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||||||||||||| || ||||||| ||| || ||||| ||||||||| Sbjct 1720435 ATCTCCCACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGTATCGTCAACGAGAACCTCCT 1720377 Query 1455948 CGGCCGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGA 1456006 || || || | || ||||||||| | || ||||| || | || ||||| ||||||| Sbjct 1720376 CGAGCGTTTCTCTGGC-GAGGTCCAAGTCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGA 1720318 Query 1456007 TCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGG 1456066 || || || ||||||||||| || |||||||| || || |||||||||||| || | Sbjct 1720317 TCATGATGGAGAACATCCACTCCGAGACCTACTCCCTTCTCATCGACACCTACATCCGCG 1720258 Query 1456067 ACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 | | | |||| || || ||||| |||| |||| || | || | || | | Sbjct 1720257 AGGCCGCCGAGCGCGAGCATCTCTTCAACGCCGTCGAGACCATCCCCTGTGTCGCGCGCA 1720198 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 |||| | ||||| | |||||||||| | || | || | ||| | || || Sbjct 1720197 AGGCGCAGTGGGCTCTCCGGTGGATCAACGACGACCG-TTCTTC-CTTCGGTATCCGCCT 1720140 Query 1456187 CGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTG 1456245 ||||| || |||| ||||||||| ||||| ||||| ||||| || | |||||| || Sbjct 1720139 CGTCGCTTTCGCCGCCGTCGAGGGTATCTTCTTCTCCGGCAGCTTTGCCAGCATCTTCTG 1720080 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCG 1456305 ||||||||||||||| ||||||||||||| || ||| |||||| | |||| ||||| Sbjct 1720079 GCTCAAGAAGCGCGGTCTCATGCCCGGTC-TCACCTTCTCCAACGAGCTCATCACTCGCG 1720021 Query 1456306 ACGA 1456309 |||| Sbjct 1720020 ACGA 1720017 Score = 123 bits (136), Expect = 4e-22 Identities = 137/176 (78%), Gaps = 9/176 (5%) Strand=Plus/Minus Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628 ||||||| || ||||| ||||||||| | || ||| |||||||||||||| || || Sbjct 1719844 CGCTGCCCGTCAGCCTCATTGGCATGAACTCGAC-GCTTATGTGCCAGTACATCGAGTTC 1719786 Query 1456629 TGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTAC--CG-GACGGCCA 1456685 ||||||||||||||||||| || |||||| || ||||| ||| || |||| | Sbjct 1719785 -GTCGCCGACCGCCTGCTCGTCGCCCTCGGCAACG-AGAAGGTGTACAACGTGACG---A 1719731 Query 1456686 ACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||||||| | ||||| ||||||||||| |||||||||||||||| || ||| Sbjct 1719730 ACCCGTTCGACTTCATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTTGAG 1719675 >seq21 Length=547483 Score = 188 bits (208), Expect = 1e-41 Identities = 354/506 (70%), Gaps = 16/506 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||| |||||| | |||| || || || || |||||||| || ||| | |||| Sbjct 164512 GATCTGGGCCATGTACAAGAAAGAA-GAAGCGTCTTTCTGGACCGCAGAAGAGATGGACC 164570 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | |||||| || ||| |||| ||||||| || |||||| Sbjct 164571 TCTCCAAGGACCTCCACGACTGGGAAGAGCGCATGAACGACAACGAGCGGCACTTCATCT 164630 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||||||||| || ||||||| ||| |||||||| |||||||||| | | Sbjct 164631 CCCACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTCAACGAGAACCTGCTCACC 164689 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| |||||| | | || ||||| || | || ||||| ||||||||| Sbjct 164690 CGCTTCTGCGGCGAGGTCAAGGTCCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCATG 164749 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||| | ||||| || || ||||| ||||| |||||||| ||| || ||||| Sbjct 164750 ATGGAGAACGTGCACTCGGAGACGTACTCCCTCCTCATCGACACGTACATCCGCGACCCC 164809 Query 1456072 GTCGAGAAGGACCA-CCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | | || | || |||| | |||| |||| || | |||| ||| | || ||||| Sbjct 164810 GCCCAGC-GCACGTTCCTCCTCAACGCCGTCGAGACCATCCCGTGCGTGCGCAAGAAGGC 164868 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAG-GGC-CTCGACACTTTGCCGAGCGGCTCG 1456188 || |||||| || |||||| ||| ||| ||||| |||||| |||||| Sbjct 164869 GGAGTGGGCGCTGCGCTGGATCGC---GGATCGGCGCTCGAG-CTTTGCGATACGGCTCA 164924 Query 1456189 TCGGCTTTGCCGCG-TCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGG 1456246 ||| || | ||| | ||||| || || ||||||||||| || |||| |||||||||| Sbjct 164925 TCGCGTTCTCGGCGGTGGAGGGGATTTTCTTCTCGGGCAGCTT-TGCGAGCATCTTTTGG 164983 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGG 1456272 || |||||||| || | ||||| || Sbjct 164984 CTGAAGAAGCGGGGGTTGATGCCTGG 165009 >seq8 Length=1038518 Score = 109 bits (120), Expect = 8e-18 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 259868 GAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCC 259927 |||| ||| |||| |||||| | |||||| | | | |||||| ||| | ||| Sbjct 198594 GAGCGCGTTCTCGAGACCTACAACCTTATGTCGGACCGCTACTTCACCCATGCGTCACCC 198653 Query 259928 ACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCG-TCGTGCTTTCTGTTGGACAT 259986 || || || || ||||| || || | |||||| ||| | |||||||| || | || Sbjct 198654 ACCCTGTTCAACGCCGGTACCCCTCACCCGCA-AATGAGCTCGTGCTTCCTCGTCTCGAT 198712 Query 259987 GAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAA 260046 ||||| ||| ||||| ||||||||||| ||||| |||||||||||||| | ||| || Sbjct 198713 GAAGGACGACTCGATAGAGGGCATCTACGACACCCTCAAGCAGTGCGCTATGATCAGTAA 198772 Query 260047 GGCGGCCGGCGGCATCGGT 260065 | | || ||||| |||||| Sbjct 198773 GACTGCTGGCGGTATCGGT 198791 Score = 86.0 bits (94), Expect = 9e-11 Identities = 170/247 (69%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 263177 TCAAGGCTCTCTTCAAGACCGTGTGGGAGGT---GCCCAACCGGGTGACCATTGATATGG 263233 ||||||| ||| |||||| ||||||||| | || || |||| | || ||| Sbjct 200268 TCAAGGCGATCTACAAGACGGTGTGGGAGATCTCGCAGAAGAAGGTGC---TGGACCTGG 200324 Query 263234 CGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACC 263293 |||| ||||| | || | || ||||||||||||||| ||| || |||| || | | Sbjct 200325 CGGCGGACCGGGGCCCGTTCATCTGCCAGAGCCAGTCGCTGAACGTGCACCTGGCGGCGC 200384 Query 263294 CGACGGCCGAG--AGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGAC 263351 |||| || | | || | ||| |||||| ||||| |||| || || ||||| Sbjct 200385 CGAC-GCTGGGCCAG-TTGACGAGCATGCACTTCTATGGGTGGAAGAAGGGGCTGAAGAC 200442 Query 263352 TGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGATCA 263411 || ||||| ||| |||| || ||||| || | | || || || || || ||||| || Sbjct 200443 GGGGATGTATTATTTGCGGACGCGGCCGGCGTCGCAGGCGATCCAGTTTACGGTCGACCA 200502 Query 263412 GGCGATG 263418 ||||||| Sbjct 200503 GGCGATG 200509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177789016077260