Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7 120 3e-22 seq2 111 1e-19 >seq7 Length=1356190 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | | ||| || |||| ||||||||||| || || || Sbjct 309073 CTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 309132 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | ||||| || |||||| ||| |||||| ||| | || Sbjct 309133 GATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCCTGGATCTTCGCCTTGA-CGT 309191 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||| ||| || || ||||| | ||||||||| || || ||||| || || | Sbjct 309192 TGTCGATCGTATCGGAGGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAACGTCTTGA 309251 Query 35724 CAAATATCTGCAT 35736 | || || ||||| Sbjct 309252 CGAAGATTTGCAT 309264 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | || || | || ||||||||||| || || || Sbjct 309529 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTACGACCATCCTCCAGCTGCTTCCCGGCGAA 309588 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||| | || |||||||||| |||||| ||||| || Sbjct 309589 GATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGT 309647 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || ||||| | ||||| || || || ||||| || || | Sbjct 309648 TGTCGATCGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTCAAGGTCTTGA 309707 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 309708 CGAAGATCTGCAT 309720 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| ||| || ||| | || || |||||||| || ||||| Sbjct 309810 CTCCTTCTGAATGTTGTAGTCGGACAACGTGCGCCCATCCTCAAGCTGCTTGCCAGCAAA 309869 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | | |||||||||| |||||| ||| | || Sbjct 309870 GATAAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 309928 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| ||| || ||||| | ||||| || || ||||| | || || | Sbjct 309929 TGTCGATGGTGTCCGACGACTCAACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTAA 309988 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 309989 CGAAGATCTGCAT 310001 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || |||| || |||||||| || || || Sbjct 309301 CTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTCCCAGCGAA 309360 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| ||||| ||||| | | Sbjct 309361 GATGAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATT 309420 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || ||||||| |||||||| || ||||| | || || || Sbjct 309421 GTCGATGGTGTCAGATGACTCGACCTCCAGGGTGATCGTCTTGCCCGTGAGGGTCTTGAC 309480 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 309481 GAAGATCTGCAT 309492 >seq2 Length=2907307 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | ||| || |||| || |||||||| ||||| || Sbjct 2173205 CTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTCCTCAAGCTGCTTGCCCGCGAA 2173146 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| ||||| ||| | || Sbjct 2173145 GATAAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTGA-CGT 2173087 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || ||||| | ||||||||| || ||||| | || |||| Sbjct 2173086 TGTCGATGGTGTCGGAGGACTCGACCTCGAGCGTGATCGTCTTCCCCGTGAGCGTCTTCA 2173027 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 2173026 CGAAGATCTGCAT 2173014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792303968400