Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 127 3e-24 seq3 113 6e-20 seq23 87.8 2e-12 seq21 84.2 3e-11 >seq1 Length=3010126 Score = 127 bits (140), Expect = 3e-24 Identities = 319/475 (67%), Gaps = 20/475 (4%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 ||||||||| ||| | || ||||| || |||||| || || |||||| ||||| Sbjct 2094674 GGCAAACTCGGTGTGCATGCCTTCGTCGCGACTGATGAGCTCGTTGGAGAAGGTGAGACC 2094615 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| || || |||||||||| |||||| || || || || ||||||||||| || Sbjct 2094614 AGGCATAAGCCCGCGCTTCTTCAGCCAGAAGATAGCGGCGAAGGACCCAGAGAAGAATAT 2094555 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 ||| |||||| |||||||| | ||| || || || || | || |||| ||| | Sbjct 2094554 CCCTTCCACAGCGGCGAACGCCACGAGTCGTTCCGCGAACG-TCGATGATTTG--TCAGA 2094498 Query 130195 ---CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 130251 ||| | | |||||| | |||||| || ||| ||||| | |||| ||| || | Sbjct 2094497 GTTCCATCTAAGCGCCCAGTCCGCCTTGCGCTTGATGCACGGAATTGTCTCGATGGCAGC 2094438 Query 130252 AAAGAGTTCCT-TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATG 130310 ||||| | | || | |||| || || |||||||| | || |||||| || || | Sbjct 2094437 GAAGAGGTGGTCTCGCTCCTGA-GGGTCCTTGATGTAGGTGTCGATGAGTAGGGAGTAGG 2094379 Query 130311 TTTCGCCATGGACCATT-----TCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTC 130365 |||| | | || || ||||||| ||| | ||||||| ||||||| || Sbjct 2094378 TTTC-CGAGTGAATGTTCTCCATCATTAT----CTGGAAGCCGTAGAAGCAGCGCGCCTC 2094324 Query 130366 GCTTATCTGTACCTCATCTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGG 130424 ||| ||||| | || |||| | | | || ||||| ||||| ||||||| Sbjct 2094323 CGCCGCCTGAACCTCGT-TGGAAAAGCGCTCAACGAGGTTCTCGTTGACAATCCCATCGG 2094265 Query 130425 ACCCAGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAG 130479 | | || || || ||||||| | || || || | |||| || |||||||| Sbjct 2094264 AGGCGGCGAAGAAAGCCAGGACGTGTTTGATAAAATGGCGTTCGTTGTCGTTCAG 2094210 >seq3 Length=1901115 Score = 113 bits (124), Expect = 6e-20 Identities = 343/525 (65%), Gaps = 15/525 (3%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| | |||||||| || | |||||| || || |||||| ||||| Sbjct 1719995 GGCAAAGTCGGTGTGCATCCCCTCGTCGCGAGTGATGAGCTCGTTGGAGAAGGTGAGACC 1720054 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| || ||| ||| ||||||||||| Sbjct 1720055 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGCTGGCAAAGCTGCCGGAGAAGAAGAT 1720114 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG---GAGCGG--GACTTTGTA 130189 ||||| || ||||| || | ||| || | | ||| || ||| | | ||| Sbjct 1720115 ACCCTCGACGGCGGCGAAAGCGACGAGGCGGATACCGAAGGAAGAACGGTCGTCGTTG-- 1720172 Query 130190 TCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCT 130249 | |||| | |||||||||||||| | ||| ||| |||| ||||| || || Sbjct 1720173 ---ATCCACCGGAGAGCCCACTGCGCCTTGCGCGCGACACAGGGGATGGTCTCGACGGCG 1720229 Query 130250 TCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATAT 130309 | ||||| | || || | | || |||||| | || ||||| || || Sbjct 1720230 TTGAAGAGATGCTCGCGCTCGGCGGCCTCGCGGATGTAGGTGTCGATGAGAAGGGAGTAG 1720289 Query 130310 GTTTCGCCATGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCT 130368 || ||| |||| | | ||| || | ||| | ||||||| |||| || ||| Sbjct 1720290 GTCTCGGAGTGGATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCAGCGAGCCTCGGG 1720348 Query 130369 TATCTGTACCTCATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCC 130428 | || ||||| | | ||| | || ||||| || || || ||||| | Sbjct 1720349 GACTTGGACCTCGCCAGAGAAACGCTCGAGGAGGTTCTCGTTGACGATACCGTCGGAGGC 1720408 Query 130429 AGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTT 130485 || || || || |||| | ||||| | | ||||| ||||||| || ||| Sbjct 1720409 GGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGGCGCTCATTGTCGTTCATGCGGTTCTG 1720468 Query 130486 CCAGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||||| ||| |||||||| ||||| | |||||| |||||||| Sbjct 1720469 CCAGTCGTGAAGGTCCTTCGACAGATCCATCTCCTCGGCAGTCCA 1720513 >seq23 Length=551115 Score = 87.8 bits (96), Expect = 2e-12 Identities = 213/316 (67%), Gaps = 10/316 (3%) Strand=Plus/Minus Query 179808 ATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACATCTTGATAATCCTTAC 179866 ||||||||||||||| | | || || || ||||||| | ||| |||||||| Sbjct 350564 ATCCGTCATAATCATCAACTTGCCGTACCGCAAGCTCGCGAT-ATCAGTGTAATCCTTGT 350506 Query 179867 CTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTG-- 179924 || || ||||||| ||||||||||| || | || ||| | ||| ||| ||| Sbjct 350505 TGTGCTGCAGACCCAGGATCTTCTTGATATTCTGGATCTCCTCGTTCTTCATGATTTGGT 350446 Query 179925 CGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTG 179984 || || | || || ||||| || |||| ||||| | ||||| |||||||||| Sbjct 350445 CGTGACGG--GCTTCGCGGACGTTCAGCAACTTGCCACGCAAGGGGAAGACACCGTAGTT 350388 Query 179985 ATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGT 180044 || || || || || ||| ||||| | ||||| | ||| ||||| || || || || Sbjct 350387 GTCGCGGCCGACGACGCCGAGGCCAGCGATGGCGAGAGCCTTGGCGGAGTCTCCTTCGGT 350328 Query 180045 CACGATGAGCGTACA--CTTTCCAGATTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCAAC 180102 | |||||| || || | ||| | | ||| || || || || |||||| | | Sbjct 350327 AAGGATGAGGGTGCAGTCCTTC--GCGTACTTCGTGCCGGCGTTATTGGCGTCGGAGAGC 350270 Query 180103 TTGGGAATACCAGTAA 180118 ||||||| || |||| Sbjct 350269 TTGGGAAGGCCGGTAA 350254 >seq21 Length=547483 Score = 84.2 bits (92), Expect = 3e-11 Identities = 150/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| || | |||||| || |||||||| || || ||||| | ||||||||| Sbjct 165048 CCCTCGTCGCGCGTGATGAGCTCGTTCGAGAACGTCAACCCAGGCATCAACCCCCGCTTC 164989 Query 130094 TTCAACCAGAAAATCGCACAAAATGA-GCCAGAGAAGAAGATCCCCTCCACACACGCGAA 130152 |||| ||| || || || | || | ||| |||||||| ||||||||||| || ||| Sbjct 164988 TTCAGCCAAAAGAT-GCTCGCAAAGCTGCCCGAGAAGAAAATCCCCTCCACCGCCGAGAA 164930 Query 130153 CGCAAAGAGACGCTCAGCAAAG---GAGCGGGACTTTGTATCAAACCACTTCATCGCCCA 130209 ||| | ||| || |||||| ||||| | | | | ||| || |||||| Sbjct 164929 CGCGATGAGCCGTATCGCAAAGCTCGAGCGCCGATCCG---CGATCCAGCGCAGCGCCCA 164873 Query 130210 CTGCGCCTTTTTCTCGATACACGGGACGGTCTGGA 130244 || |||||| || | ||||||| ||||| || Sbjct 164872 CTCCGCCTTCTTGCGCACGCACGGGATGGTCTCGA 164838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433421998800