Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-24 seq3 111 2e-19 seq23 107 2e-18 seq21 82.4 9e-11 >seq1 Length=3010126 Score = 127 bits (140), Expect = 2e-24 Identities = 302/449 (67%), Gaps = 12/449 (3%) Strand=Plus/Plus Query 94513 TTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATC 94572 || || ||| || ||||||| ||||| || | |||||||| ||||| ||||| || Sbjct 2094231 TTTATCAAACACGTCCTGGCTTTCTTCGCCGCCTCCGATGGGATTGTCAACGAGAACCTC 2094290 Query 94573 AATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAG 94632 | | |||| | | ||||| || | | || ||| | | |||||| | | ||| Sbjct 2094291 GTTGAGCGCTTTTCCAACGAGGTTCAGGCGGCGGAGGCGCGCTGCTTCTACGGCTTCCAG 2094350 Query 94633 TGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAA 94691 | || ||| | | | || ||| || ||| |||||| |||| || || || Sbjct 2094351 A-TAATGATGGAGAACATTCACTCGGAAACCTACTCCCTACTCATCGACACCTACATCAA 2094409 Query 94692 GGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAA 94751 ||| | ||| | || ||||| | |||||| | ||| ||||||| || ||| Sbjct 2094410 GGACCCTCAGGAGCGAGACCACCTCTTCGCTGCCATCGAGACAATTCCGTGCAT-CAAGC 2094468 Query 94752 GAAAG-CGGATTGGGCTATGAAGTGG---TTTGATACAAAGTCG-CGTTCCTTTGCTGAG 94806 | ||| |||| ||||| | | ||| | ||| | | ||| ||||| || || Sbjct 2094469 GCAAGGCGGACTGGGCGCTTAGATGGAACTCTGACAAATCATCGACGTTC----GCGGAA 2094524 Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866 |||||| | || || || ||| || || || ||||||||||| |||||| |||||| Sbjct 2094525 CGACTCGTGGCGTTCGCCGCTGTGGAAGGGATATTCTTCTCTGGGTCCTTCGCCGCTATC 2094584 Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926 | ||||| |||||||| || || ||||| |||||| ||||||||||||||| ||| | Sbjct 2094585 TTCTGGCTGAAGAAGCGCGGGCTTATGCCTGGTCTCACCTTCTCCAACGAGCTCATCAGT 2094644 Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || ||||| || | ||| |||||||| Sbjct 2094645 CGCGACGAAGGCATGCACACCGAGTTTGC 2094673 >seq3 Length=1901115 Score = 111 bits (122), Expect = 2e-19 Identities = 125/164 (76%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 |||||| | | || ||| |||| || || || ||||||||||||||||| || Sbjct 1720157 TTCCTTCGGTATCCGCCTCGTCGCTTTCGCCGCCGTCGAGGGTATCTTCTTCTCCGGCAG 1720098 Query 94854 CTTCTGC--GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 94911 ||| ||| || || | |||||||||||||| ||||||||||| |||||| ||||||| Sbjct 1720097 CTT-TGCCAGC-ATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCC 1720040 Query 94912 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| ||| |||| |||||||| | ||| || ||||| Sbjct 1720039 AACGAGCTCATCACTCGCGACGAGGGGATGCACACCGACTTTGC 1719996 >seq23 Length=551115 Score = 107 bits (118), Expect = 2e-18 Identities = 181/258 (70%), Gaps = 12/258 (5%) Strand=Plus/Minus Query 169201 ATCCGTCATGATCATGAGACGACCATACCG-AAGCTCGGAAACATCTTGATAGTCCTTAC 169259 ||||||||| ||||| | || ||||| ||||||| | ||| || ||||| Sbjct 350564 ATCCGTCATAATCATCAACTTGCCGTACCGCAAGCTCGCGAT-ATCAGTGTAATCCTTGT 350506 Query 169260 CCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTT-----TGATGTGAG 169314 || || ||||||| ||||||||||| || | || ||| | ||| |||| || Sbjct 350505 TGTGCTGCAGACCCAGGATCTTCTTGATATTCTGGATCTCCTCGTTCTTCATGATTTGGT 350446 Query 169315 CTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTA 169374 | ||||| | || ||||| || ||| |||| ||||| | |||||||||||||| Sbjct 350445 C---GTGACGG--GCTTCGCGGACGTTCAGCAACTTGCCACGCAAGGGGAAGACACCGTA 350391 Query 169375 GTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTC 169434 || || || || |||||| ||| || |||| ||||||| ||| || ||||| || || Sbjct 350390 GTTGTCGCGGCCGACGACGCCGAGGCCAGCGATGGCGAGAGCCTTGGCGGAGTCTCCTTC 350331 Query 169435 GGTGACGATGAGCGTACA 169452 ||| | |||||| || || Sbjct 350330 GGTAAGGATGAGGGTGCA 350313 >seq21 Length=547483 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||| ||||| || ||| | | || || ||| || || || || | | Sbjct 418868 CGCTTCTACCAGGCCTCCACCAGCGAGCTCTACGGCAAGGTCGTCGAGACCCCGCAGAGC 418927 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| || |||||||| |||||| ||||| ||| | ||| | || | ||| Sbjct 418928 GAGACGACGCCGTTCTACCCGCGCTCGCCGTACGGCGTCGCGAAGCTCTACGCGTACTGG 418987 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||||| || ||||||||||| ||||| |||| |||||| || ||||| |||||| Sbjct 418988 ATCGTCGTCAACTACCGCGAGTCGTACGGGATGTTCGCGTGCAATGGGATCCTGTTCAAC 419047 Query 7412 CATGA 7416 || || Sbjct 419048 CACGA 419052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259123125200