Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq8 228 9e-55 seq1 98.7 1e-15 seq3 82.4 8e-11 >seq8 Length=1038518 Score = 228 bits (252), Expect = 9e-55 Identities = 430/622 (69%), Gaps = 18/622 (3%) Strand=Plus/Minus Query 78545 TCGTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGC 78603 |||| |||||||| ||||| ||| |||||||||| ||||| ||||| || |||||| Sbjct 200055 TCGTATACGGCTC-AAAGCACTCATTGTTCCCCAAAATCTGACTCGTCGACGCCGTCGGC 199997 Query 78604 ATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAG---- 78659 || || || || || || | |||||| | || | | |||| |||| | Sbjct 199996 ATCGGCGCAACAAGCAGCGCATTCCGCATCCCCGTCCGCGCAATCTTCGCCTTCAACGAC 199937 Query 78660 GCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCG 78717 ||| |||||| | || ||| || | ||||||| ||| || || |||| | Sbjct 199936 GCCCAGTCCCACAGATCTGTCGGCGTCACGCCCCACAGGTCAAACTGCAGCTGGCCCTGG 199877 Query 78718 GACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGAC 78777 |||||| |||| |||||||||| | |||||||||| |||||| || | ||| Sbjct 199876 CTCGCCGGGCTGCCCTCCCACGTCTCGTACGGGCCCTCCTCCTCGGCGAGGTCAGAGGAC 199817 Query 78778 TCGA-GCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTT 78836 | ||| | | |||||||| | | ||||||||| |||||| ||||||||||||| Sbjct 199816 GCCTCGCACG-CTGCGTGGTAGATCGTCTCGAAGATCTGCTTGTTCAGCTCGCGCGCCTC 199758 Query 78837 GGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGAT 78896 || | |||||||| | || ||| ||| ||| | ||||| ||||||||||| |||| Sbjct 199757 GGGCGAGTCGAACGGCATGCGCAGCGCCATAAAGGCGTCGGCGAGGCCCTGGACACCGAG 199698 Query 78897 AGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGG---TCGGGTAAAAGTT 78953 | | || || ||||||||||||| || || |||||||| |||||| |||| Sbjct 199697 ACCAATGGGGCGGTGGCGCATGT---TCGAGCGCCTCGCCTCGGGGACCGGGTAGTAGTT 199641 Query 78954 CCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGC 79013 ||||||| ||||||||| || ||||| ||| || || |||| || || Sbjct 199640 GACGTCGATGATCTTGTTCAGGTTGCGAGTGACCACCTTCGTGACGTCGTGCAGCTTCTG 199581 Query 79014 GAAATC-AAAATGATTTCCTTTGATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACA 79072 ||| || | | | | | |||||| || || || || || ||||||||||| | Sbjct 199580 GAAGTCGTACACGCCGT-CGCGGATGAAGGTGGGCAGCGCGAGGGAGGCCAGGTTGCAGA 199522 Query 79073 CGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGA 79132 | || ||||| || || ||| ||||||||| || |||||||| || |||||||||| Sbjct 199521 CAGCGGTCTCATCGGGAGCAGAGTACTCGATGATCTCCGTGCACAAGTTGGACGACTTGA 199462 Query 79133 TGGTGCCGATGTTCTTCTGGTT 79154 | || |||| ||||| |||||| Sbjct 199461 TTGTACCGAGGTTCTGCTGGTT 199440 Score = 219 bits (242), Expect = 5e-52 Identities = 430/628 (68%), Gaps = 16/628 (3%) Strand=Plus/Plus Query 19843 CAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCAT 19902 ||| || || ||| ||||| |||| | ||||||||||||||| |||| || || ||||| Sbjct 199433 CAAATCGAACCAGCAGAACCTCGGTACAATCAAGTCGTCCAACTTGTGCACGGAGATCAT 199492 Query 19903 GGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGAC 19962 ||| || || || ||||| || || || || ||||| ||||| ||||| || Sbjct 199493 CGAGTACTCTGCTCCCGATGAGACCGCTGTCTGCAACCTGGCCTCCCTCGCGCTGCCCAC 199552 Query 19963 TTTCGTCAAGGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCAC 20022 ||| || | | | | |||||| || || |||| || || ||| ||||| Sbjct 199553 CTTCATCCGCGACGGCGTGTACGACTTCCAGAAGCTGCACGACGTCACGAAGGTGGTCAC 199612 Query 20023 GCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGA---CCGAGGCGGCGCGCAA 20079 || || ||||| ||||||| |||| |||||| |||||||| |||| Sbjct 199613 TCGCAACCTGAACAAGATCATCGACGTCAACTACTACCCGGTCCCCGAGGCGAGGCGC-- 199670 Query 20080 GTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCAT 20139 ||||| ||||||||||| || || | |||| ||||||||||| ||||||| || || Sbjct 199671 -TCGAACATGCGCCACCGCCCCATTGGTCTCGGTGTCCAGGGCCTCGCCGACGCCTTTAT 199729 Query 20140 GATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGA 20199 | ||| || | | |||||| ||| ||||||||||||| |||||| |||||||| Sbjct 199730 GGCGCTGCGCATGCCGTTCGACTCGCCCGAGGCGCGCGAGCTGAACAAGCAGATCTTCGA 199789 Query 20200 GGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTA 20259 | | | |||||||| || | || || | || |||||| | ||||| |||||||| Sbjct 199790 GACGATCTACCACGCAGCGTGCGAGGCGTCCTCTGACCTCGCCGAGGAGGAGGGCCCGTA 199849 Query 20260 CGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGT 20319 |||||||| |||| || ||| | |||| || ||| ||| |||||||||| Sbjct 199850 CGAGACGTGGGAGGGCAGCCCGGCGAGCCAGGGCCAGCTGCAGTTTGACCTGTGGGGCGT 199909 Query 20320 CACTGAGAATGAGTTTTG-----GAGCG-CCCTCAAGGTTGAGATCAAGACCCAC-GGGC 20372 || || || | || | ||| | | |||| |||| | | || ||| Sbjct 199910 GACGCCGACAGATCTGTGGGACTGGGCGTCGTTGAAGGCGAAGATTGCG-CGGACGGGGA 199968 Query 20373 TTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGA 20432 | || || || |||| || ||||| |||||||| || ||||| ||||| |||||| Sbjct 199969 TGCGGAATGCGCTGCTTGTTGCGCCGATGCCGACGGCGTCGACGAGTCAGATTTTGGGGA 200028 Query 20433 ACAACGAG-GCTTTCGAGCCGTACACGA 20459 |||| ||| ||||| |||||||| |||| Sbjct 200029 ACAATGAGTGCTTT-GAGCCGTATACGA 200055 Score = 192 bits (212), Expect = 6e-44 Identities = 389/579 (67%), Gaps = 55/579 (9%) Strand=Plus/Minus Query 79387 AAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 |||||||| |||||||| ||||| ||| ||||||||| |||| |||||| | ||| Sbjct 199104 AAGAGGTCAGGGATCCAAAGGGCGTAGAACAGGTCGCGGGCACGCTGCTCCTCCTTGCCG 199045 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506 |||||| | || ||||| || || | || ||||| |||||||||||| || ||||| Sbjct 199044 TGGTTCTTCCTCAAGTCGAGGAACTCGAAGACGTCGGGGTGCCACGGCTCGAGGTAGATA 198985 Query 79507 GCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAA 79566 || |||| ||| |||||| ||| ||||||| |||||| || || ||| || | | Sbjct 198984 GCAAACGCCCCCGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGGCGTCGTAC 198925 Query 79567 ACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTG----- 79621 | || ||||| |||||||| |||| | | |||||| || ||| ||| || Sbjct 198924 GCGCGAAGCATAGGCACGATACCGTTCGAGTAGCCGTTGGTACCGGCGATGTATGAGCTG 198865 Query 79622 --------TACCGCTCGCCC-GAATG---TTCG--AGCA--------------------- 79646 || || ||||| || | ||| |||| Sbjct 198864 CAAGATGTTAGCGAACGCCCCGACAGCGTTTCTGAAGCACATACCCAGTAGCGCGGATGT 198805 Query 79647 -GTGGATT------CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCG 79699 |||||| ||||| || || | ||| ||| ||||||| |||||| | Sbjct 198804 TGTGGATGTTGAGACCGATACCGCCAGCAGTCTTACTGATCATAGCGCACTGCTTGAGGG 198745 Query 79700 TCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGA---CA 79756 | |||||||||||||| ||||||||||||||||| | ||| |||||||| ||| || Sbjct 198744 TGTCGTAGATGCCCTCTATCGAGTCGTCCTTCATCGAGACGAGGAAGCA---CGAGCTCA 198688 Query 79757 TCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTT 79816 | || |||| |||||||||||||| ||||| || | ||| || |||||| | | Sbjct 198687 TTTGCGGGTGAGGGGTACCGGCGTTGAACAGGGTGGGTGACGCATGGGTGAAGTAGCGGT 198628 Query 79817 GGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCG 79876 ||| || | ||| ||||| |||||| || || |||||||||||||| || | Sbjct 198627 CCGACATAAGGTTGTAGGTCTCGAGAACGCGCTCGATGTTATCGCCGTGGATGCCCACTG 198568 Query 79877 CGACGCGCATGAAGAGGTACTG-GGGCGTCTCGCCGACA 79914 |||||||||||| | || || ||||| ||| ||||| Sbjct 198567 CGACGCGCATGATCATGTGTTGAGGGCG-CTCAGCGACA 198530 Score = 145 bits (160), Expect = 8e-30 Identities = 373/567 (66%), Gaps = 57/567 (10%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 ||||| || | ||||||| ||||| || |||||||| ||||| || || ||| || Sbjct 198543 CCTCAACACATGATCATGCGCGTCGCAGTGGGCATCCACGGCGATAACATCGAGCGCGTT 198602 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 | |||||| ||| |||| ||| | | |||||| || ||| | || ||||| ||| Sbjct 198603 CTCGAGACCTACAACCTTATGTCGGACCGCTACTTCACCCATGCGTCACCCACCCTGTTC 198662 Query 19223 AACGCCGGTACGAACAACCCGCAGATG---TCGAGCTGTTTCCTAGTGGCTATGAAGGAT 19279 ||||||||||| ||||||| ||| ||| || ||||| || | |||||||| Sbjct 198663 AACGCCGGTACCCCTCACCCGCAAATGAGCTCG---TGCTTCCTCGTCTCGATGAAGGAC 198719 Query 19280 GACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCC 19339 ||| || |||||||||||||| || |||||| ||||||| ||| ||| | Sbjct 198720 GACTCGATAGAGGGCATCTACGACACCCTCAAGCAGTGCGCTATGATCAGTAAGACTGCT 198779 Query 19340 GGGGGTATCGG------GATCCAC----------------------TGC-TCGAATATCC 19370 || |||||||| |||||| ||| || | | | Sbjct 198780 GGCGGTATCGGTCTCAACATCCACAACATCCGCGCTACTGGGTATGTGCTTCAGAAACGC 198839 Query 19371 GGTCGAGTGGTACACGAA-----------TCA---AT----GGGACGAACGGAGTAGCCG 19412 |||| | || | | || ||| || || || ||||| || || Sbjct 198840 TGTCGGGGCGTTCGCTAACATCTTGCAGCTCATACATCGCCGGTACCAACGG-CTACTCG 198898 Query 19413 A-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGG 19471 | ||||||||| || ||||| |||| | | || ||| || | |||||| ||||||| Sbjct 198899 AACGGTATCGTGCCTATGCTTCGCGCGTACGACGCCACTGCGCGCTACGTCGACCAGGGT 198958 Query 19472 GGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATG 19531 ||| ||| || ||| |||| || |||||||||||||| |||||| | |||||| | Sbjct 198959 GGCAACAAGCGTCCGGGGGCGTTTGCTATCTACCTCGAGCCGTGGCACCCCGACGTCTTC 199018 Query 19532 GATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC 19591 || |||||||| || | |||||| || | |||||| ||| |||||||| ||| Sbjct 199019 GAGTTCCTCGACTTGAGGAAGAACCACGGCAAGGAGGAGCAGCGTGCCCGCGACCTGTTC 199078 Query 19592 -ACGGCCTTGTGGATTCCGGACCTATT 19617 ||| |||| ||||| || ||||| || Sbjct 199079 TACGCCCTT-TGGATCCCTGACCTCTT 199104 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 78187 CGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATA 78246 || || |||||||| ||||| |||||||| || ||||||||||| || || | |||||| Sbjct 200466 CGCGTCCGCAAATAATACATCCCCGTCTTCAGCCCCTTCTTCCACCCATAGAAGTGCATG 200407 Query 78247 CTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCG 78306 |||| || || | |||| |||| | ||| | | ||| ||||||||| |||| | Sbjct 200406 CTCGTCAACTGGCCCAGCGTCGGCGCCGCCAGGTGCACGTTCAGCGACTGGCTCTGGCAG 200347 Query 78307 ATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATG 78366 ||| ||| || ||||| ||||||| ||| | ||| ||| |||| |||||||| | Sbjct 200346 ATGAACGGGCCCCGGTCCGCCGCCAGGTCCAGCACCTTCTTCTGCGAGATCTCCCACACC 200287 Query 78367 GTCCGGTAAATGGCCTTCAGCTCTTCCTGGATG 78399 ||| ||| || ||||| | || ||| ||||| Sbjct 200286 GTCTTGTAGATCGCCTTGATGTCGTCCGGGATG 200254 >seq1 Length=3010126 Score = 98.7 bits (108), Expect = 1e-15 Identities = 301/461 (65%), Gaps = 11/461 (2%) Strand=Plus/Plus Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 || |||| | ||||| ||||| |||||||| |||||||| || ||||| |||| Sbjct 2094217 ACAACGAACGCCATTTTATCAAACACGTCCTGGCTTTCTTCGCCGCCTCCGATGGGATTG 2094276 Query 59737 TGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGT 59796 | | || || | | | ||||||||| || || ||| || ||||| || | | Sbjct 2094277 TCAACGAGAACCTCGTTGAGCGCTTTTCCAACGAGGTTCAGGCGGCGGAGGCGCGCTGCT 2094336 Query 59797 TCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCG 59856 |||||| | ||| | | ||| || ||||| || || ||||| || | |||| Sbjct 2094337 TCTACGGCTTCCAGATAATGATGGAGAACATTCACTCGGAAACCTACTCCCTACTCATCG 2094396 Query 59857 ATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCC 59915 | | | ||||||| || | ||| | || ||| |||||| ||||| | | Sbjct 2094397 ACACCTACATCAAGGACCCTCAGGAGCGAGACCACCTCTTCGCTGCCATCGAGACAATTC 2094456 Query 59916 CCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCAT-- 59973 | ||| | || | || || || ||||| | |||| | || || ||||| Sbjct 2094457 CGTGCA-TCAAGCGCAAGGCGGACTGGGCGCTTAGATGGA--ACTC-TGACAAATCATCG 2094512 Query 59974 ----TTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCG 60029 | || |||| ||| | || || || |||||||| || ||||||||||| || Sbjct 2094513 ACGTTCGCGGAACGACTCGTGGCGTTCGCCGCTGTGGAAGGGATATTCTTCTCTGGGTCC 2094572 Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 ||| ||||| |||||||| || ||||| || || ||||| || || | ||||||||| Sbjct 2094573 TTCGCCGCTATCTTCTGGCTGAAGAAGCGCGGGCTTATGCCTGGTCTCACCTTCTCCAAC 2094632 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 ||||| || || ||||| ||| | || |||||||| Sbjct 2094633 GAGCTCATCAGTCGCGACGAAGGCATGCACACCGAGTTTGC 2094673 >seq3 Length=1901115 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCT-CGTTCTGTGCTAT 60040 || ||| | ||||| || ||| || || ||||||||||| ||| | || || || Sbjct 1720144 CGCCTCGTCGCTTTCGCCGCCGTCGAGGGTATCTTCTTCTCCGGCAGCTTTGCCAGC-AT 1720086 Query 60041 TTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTC 60100 ||||||||||| ||||| || |||||||| || || | |||||||||||||| || | Sbjct 1720085 CTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCAC 1720026 Query 60101 CCGGGACGAGGG 60112 || |||||||| Sbjct 1720025 TCGCGACGAGGG 1720014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523222991200