Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq8 159 4e-34 seq1 152 6e-32 seq21 104 3e-17 seq23 91.5 2e-13 seq3 84.2 2e-11 >seq8 Length=1038518 Score = 159 bits (176), Expect = 4e-34 Identities = 365/553 (66%), Gaps = 55/553 (10%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||||||||| |||| |||||||| || || | ||| || | ||||| ||| Sbjct 198556 TCATGCGCGTCGCAGTGGGCATCCACGGCGATAACATCGAGCGCGTTCTCGAGACCTACA 198615 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | ||||| || || || | || |||||||||||||| ||||| Sbjct 198616 ACCTTATGTCGGACCGCTACTTCACCCATGCGTCACCCACCCTGTTCAACGCCGGTACCC 198675 Query 53313 ATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 |||||| || ||| |||| ||||||| || |||||||||| |||||||| || | Sbjct 198676 CTCACCCGCAAATG---AGCTCGTGCTTCCTCGTCTCGATGAAGGACGACTCGATAGAGG 198732 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGT- 53428 |||||||||| || |||||| |||| || ||| ||| | || ||||||||| Sbjct 198733 GCATCTACGACACCCTCAAGCAGTGCGCTATGATCAGTAAGACTGCTGGCGGTATCGGTC 198792 Query 53429 -----ATCCAC----------------------TGCTCGA---ACG---TCCGTGCGAAC 53455 |||||| |||| | ||| || | ||| | Sbjct 198793 TCAACATCCACAACATCCGCGCTACTGGGTATGTGCTTCAGAAACGCTGTCGGGGCGTTC 198852 Query 53456 G-------------GCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCC 53502 | || || ||| || || |||||| | | | || |||||||| Sbjct 198853 GCTAACATCTTGCAGCTCATACATCGCCGGTACCAACGGCTACTCGAACGGTATCGTGCC 198912 Query 53503 TATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAA 53562 |||||| |||| | | || ||| || || |||||| |||||||||| ||||| Sbjct 198913 TATGCTTCGCGCGTACGACGCCACTGCGCGCTACGTCGACCAGGGTGGCAACAAGCGTCC 198972 Query 53563 GGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCT 53622 |||| |||| || ||||||||||||||||||||| ||||| | | ||||| ||||| | Sbjct 198973 GGGGGCGTTTGCTATCTACCTCGAGCCGTGGCACCCCGACGTCTTCGAGTTCCTCGACTT 199032 Query 53623 GCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGA 53681 | | ||| || || | || ||| ||| ||| |||||||| ||| || || |||| Sbjct 199033 GAGGAAGAACCACGGCAAGGAGGAGCAGCGTGCCCGCGACCTGTTCTAC-GCCCTTTGGA 199091 Query 53682 TTCCGGACCTCTT 53694 | || |||||||| Sbjct 199092 TCCCTGACCTCTT 199104 Score = 116 bits (128), Expect = 4e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| ||| ||| ||||||||||||||| | ||||||| || | ||| || | Sbjct 200268 TCAAGGCGATCTACAAGACGGTGTGGGAGATCTCGCAGAAGAAGGTGCTGGACCTGGCGG 200327 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | || || || ||| |||| |||| |||||| |||||| | | ||| | || Sbjct 200328 CGGACCGGGGCCCGTTCATCTGCCAGAGCCAGTCGCTGAACGTGCACCTGGCGGCGCCGA 200387 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | |||| | |||||| |||||||| || |||||||||||||| || |||||||| | Sbjct 200388 CGCTGGGCCAGTTGACGAGCATGCACTTCTATGGGTGGAAGAAGGGGCTGAAGACGGGGA 200447 Query 55908 TGTACTATCTGCGGACCCG 55926 |||| ||| ||||||| || Sbjct 200448 TGTATTATTTGCGGACGCG 200466 >seq1 Length=3010126 Score = 152 bits (168), Expect = 6e-32 Identities = 314/461 (68%), Gaps = 7/461 (2%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 ||||||||| ||| |||||| || | || || | || || || || | || || Sbjct 2094674 GGCAAACTCGGTGTGCATGCCTTCGTCGCGACTGATGAGCTCGTTGGAGAAGGTGAGACC 2094615 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 ||||||||| || |||||||||| ||| ||||| || |||||| ||| |||||| || Sbjct 2094614 AGGCATAAGCCCGCGCTTCTTCAGCCAGAAGATAGCGGCGAAGGACCCAGAGAAGAATAT 2094555 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAAGTCAT 74926 ||||| ||| || || || || || |||| |||||| || || | | || | Sbjct 2094554 CCCTTCCACAGCGGCGAACGCCACGAGTCGTTCCGCGAACGTCGATGATTTGTCAGAGTT 2094495 Query 74927 CCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGA 74985 ||| | | ||||| || || || || |||| ||| || | || ||||| || || Sbjct 2094494 CCATCTAAGCGCCCAGTCCGCCTTGCGCTTGA-TGCACGGAATTGTCTCGATGGCAGCGA 2094436 Query 74986 AGAGGCTTGCCT-TCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTC 75044 ||||| | | || ||| | || ||||||| | |||| || | || ||||| || Sbjct 2094435 AGAGG-TGGTCTCGCTCCTGAGGGTCCTTGATGTAGGTGTCGATGAGTAGGGAGTAGGTT 2094377 Query 75045 TCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATC 75104 ||||| ||||| ||| | | |||| | ||||||| | |||||||| || | Sbjct 2094376 TCCGAGTGAATGTTCTCCATCATTATCTGGAAGCCGTAGAAGCAGCGCGCCTCCGCCGCC 2094317 Query 75105 TGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCG 75164 || || || || ||||| | ||| ||||| |||| || || || ||||||||| Sbjct 2094316 TGAACCTCGTTGGAAAAGCGCTCAACGAGGTTCTCGTTGACAATCCCATCGGAGGCGGCG 2094257 Query 75165 AAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTC 75205 || |||||||| || ||||||||| ||||| || | ||| Sbjct 2094256 AAGAAAGCCAGGACGTGTTTGATAAAATGGCGTTCGTTGTC 2094216 >seq21 Length=547483 Score = 104 bits (114), Expect = 3e-17 Identities = 120/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 124674 ATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCA 124733 |||||||||||||| ||| ||||| ||| ||||||||||||||| || ||| Sbjct 419091 ATCTTGCGCGTCACGAACGTCCTTCCGCGCCGCGGGCTCTCGTGGTTGAACAGGATCCCA 419032 Query 124734 GTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTC-ATCCAATACCCAAAGAG 124792 | ||||| |||||||||||||||||||||||| || || | ||||| ||| | |||| Sbjct 419031 TTGCACGCGAACATCCCGTACGACTCGCGGTAG-TTGACGACGATCCAGTACGCGTAGAG 418973 Query 124793 CTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 ||| | ||||| || || || |||||||| || || Sbjct 418972 CTTCGCGACGCCGTACGGCGAGCGCGGGTAGAACGGCGT 418934 >seq23 Length=551115 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| ||||| || || |||||||| || |||||||||| || || ||||||| Sbjct 349342 GTTGGCGAGCTTCGCTCCATATCCGTTGCGGCCACCGGTCAGCTTCTTTTCGTCGTCGTC 349283 Query 119143 GTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 |||||||||| || | ||||| || ||||||||||||||||| Sbjct 349282 GTAGTTGGAGGAGGAGAGGAGGTGGCCGAAGATGAGCTCGGGGAT 349238 >seq3 Length=1901115 Score = 84.2 bits (92), Expect = 2e-11 Identities = 322/498 (65%), Gaps = 22/498 (4%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG---GCACAGAAGGAACCACTG 74861 || || ||||| || || |||||||| | ||| |||||| ||| || | || | Sbjct 1720050 AGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGCTGGCAAAGCTG---CCGGAG 1720106 Query 74862 AAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA 74921 |||||||| || ||||| || || ||||| ||||| |||| | | | ||| Sbjct 1720107 AAGAAGATACCCTCGACGGCGGCGAAAGCGACGAGGCGGATACCGAAGGAAGAA-CGGTC 1720165 Query 74922 GTC----ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGAT 74977 ||| ||||| ||||||| | || || || ||| |||| || |||| Sbjct 1720166 GTCGTTGATCCACCGGAGAGCCCACTGCGCCTTGCGCGCGACACAGGGGATGGTCTCGAC 1720225 Query 74978 CGCTTGGAAGAG--GCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGT 75035 || | |||||| ||| || ||| ||| || || | |||| || | ||| Sbjct 1720226 GGCGTTGAAGAGATGCTCGCG--CTCGGCGGCCTCGCGGATGTAGGTGTCGATGAGAAGG 1720283 Query 75036 GAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCC 75095 ||||| ||||| || || || ||| | | |||| | ||||||| | || ||| Sbjct 1720284 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCC 1720343 Query 75096 TCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCC 75155 || | | || || || || ||| | | || ||||| ||||||| ||||| Sbjct 1720344 TCGGGGACTTGGACCTCGCCAGAGAAACGCTCGAGGAGGTTCTCGTTGACGATACCGTCG 1720403 Query 75156 GAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCA---TCGTCAGTGAGT 75212 ||||||||||| || || || || ||| |||||||||||| |||| || | Sbjct 1720404 GAGGCGGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGGCGCTCATTGTCGTTCATGCGG 1720463 Query 75213 TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA--ACTCC 75270 || | ||| || | |||||| || || ||| ||||||||| | |||||||| || || Sbjct 1720464 TTCTGCCAGTCGTGAAGGTCCTTCGACAGATCCATCTCCTCGGCAGTCCAGAACGACGCC 1720523 Query 75271 CAATCGCCTTTTTGTACA 75288 | ||||| ||||||| Sbjct 1720524 TCA--GCCTTCTTGTACA 1720539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214426754000