Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq8 188 8e-43 seq7 185 1e-41 seq2 152 6e-32 seq6 89.7 6e-13 seq11 82.4 9e-11 >seq8 Length=1038518 Score = 188 bits (208), Expect = 8e-43 Identities = 329/478 (69%), Gaps = 8/478 (2%) Strand=Plus/Minus Query 80539 CCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTAC 80598 ||||||| ||| ||||| ||||| |||||| ||| | ||||||||||| Sbjct 199906 CCCCACAGGTCAAACTGCAGCTGGCCCTGGCTCGCCGGGCTGCCCTCCCACGTCTCGTAC 199847 Query 80599 GGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCA 80658 ||||||||| || ||| || ||| | ||| || || ||||| || || ||| Sbjct 199846 GGGCCCTCCTCCTCGGCGAGGTCAGAGGACGCCTCGCACGCTGCGTGGTAGATCGTCTCG 199787 Query 80659 AAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATG 80718 |||| |||||||| ||||||||| || |||||||| || || || | ||| Sbjct 199786 AAGATCTGCTTGTTCAGCTCGCGCGCCTCGGGCGAGTCGAACGGCATGCGCAGCGCCATA 199727 Query 80719 AACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGC 80778 || |||| || |||||||| || |||| | || |||||||||||| ||||||| ||| Sbjct 199726 AAGGCGTCGGCGAGGCCCTGGACACCGAGACCAATGGGGCGGTGGCGCATGTTCGAGCGC 199667 Query 80779 TCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACA 80838 ||||| || | ||||| |||| ||||||| |||||||||||| || || Sbjct 199666 CTCGCCTCGGGGACCGGGTAGTAGTTGACGTCGATGATCTTGTTCAGGTTGCGAGTGACC 199607 Query 80839 ACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAATGCCGGA 80898 ||| || || || || || ||||| |||||| | | || || | ||| || Sbjct 199606 ACCTTCGTGACGTCGTGCAGCTTCTGGAAGTCGTA----CACGCCGTCGCGGATGAAGGT 199551 Query 80899 AGGC----TCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGAC 80954 ||| ||||| ||||| ||||| || || ||| || | | | | |||||| Sbjct 199550 GGGCAGCGCGAGGGAGGCCAGGTTGCAGACAGCGGTCTCATCGGGAGCAGAGTACTCGAT 199491 Query 80955 GATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTG 81012 ||| ||||||||||| || || ||||| |||||||| ||||| | |||||| || ||| Sbjct 199490 GATCTCCGTGCACAAGTTGGACGACTTGATTGTACCGAGGTTCTGCTGGTTCGATTTG 199433 Score = 104 bits (114), Expect = 3e-17 Identities = 160/228 (70%), Gaps = 9/228 (4%) Strand=Plus/Minus Query 81243 GTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTT 81302 |||||||||||| |||||| ||||||||||||| ||| |||||| | || ||||| Sbjct 199099 GTCAGGGATCCAAAGGGCGTAGAACAGGTCGCGGGCACGCTGCTCCTCCTTGCCGTGGTT 199040 Query 81303 GAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGAT 81362 | ||| ||||| || || | || ||| | ||||| ||||| || || | || | Sbjct 199039 CTTCCTCAAGTCGAGGAACTCGAAGACGTCGGGGTGCCACGGCTCGAGGTAGATAGCAAA 198980 Query 81363 CGACCCCTTGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATAC 81416 || |||| |||| ||||||||||| |||||| || ||||| |||| | | Sbjct 198979 CGCCCCC---GGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGGCGTCGTACGC 198923 Query 81417 ACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGAT 81464 || | |||||| | |||||| | || | ||||| ||||| |||| Sbjct 198922 GCGAAGCATAGGCACGATACCGTTCGAGTAGCCGTTGGTACCGGCGAT 198875 >seq7 Length=1356190 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||| |||||| | Sbjct 309492 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTGGAGGTCGAGTCATCT 309433 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || ||||||||||||||||| || || || |||||| Sbjct 309432 GACACCATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 309373 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| |||||||| | ||| || || | || || || Sbjct 309372 CAGCGTCTCATCTTCGCTGGGAAGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAAC 309313 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| | ||||| |||||||| Sbjct 309312 ATCCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGTCTCCGCGGTGG 309266 Score = 156 bits (172), Expect = 5e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||||||| | ||||||||||| || || || ||||||||||| Sbjct 309264 ATGCAAATCTTCGTCAAGACGTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCCTCC 309205 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||||| || || ||||| |||||||| |||||||| |||||| Sbjct 309204 GATACGATCGACAACGTCAAGGCGAAGATCCAGGATAAGGAGGGCATTCCTCCCGACCAG 309145 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | ||| ||||| | ||||| || Sbjct 309144 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACCCTCTCTGACTACAAC 309085 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| || || ||||| || Sbjct 309084 ATTCAGAAGGAGTCGACCCTTCACCT 309059 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||| ||||| || || || ||||| ||||| Sbjct 309720 ATGCAGATCTTCGTCAAGACCTTGACCGGGAAGACCATCACCCTCGAGGTCGAGTCCTCA 309661 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || ||||| |||||| Sbjct 309660 GACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAG 309601 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||||| |||||| || | ||||| || Sbjct 309600 CAGCGCCTTATCTTCGCCGGGAAGCAGCTGGAGGATGGTCGTACGCTCTCCGACTACAAC 309541 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| | || || || ||||| Sbjct 309540 ATCCAGAAGGAGTCTACCCTCCACCTCGTCCTTCGCCTCCGTGGTGG 309494 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || |||||||||||||| Sbjct 310001 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTTGAGTCGTCG 309942 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 309941 GACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 309882 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || ||||||| || || | | ||||| || Sbjct 309881 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGCACGTTGTCCGACTACAAC 309822 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| || || || ||||| Sbjct 309821 ATTCAGAAGGAGTCGACGCTGCATCT 309796 Score = 102 bits (112), Expect = 9e-17 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || |||||||||||||| ||||| ||||||||||| Sbjct 310278 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACTATCACTCTCGAGGTTGAGTCCTCG 310219 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| | ||||| || || |||||||||||||| Sbjct 310218 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGG 310175 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 |||||||| ||||||||||| || || ||||| || ||||| ||||| |||| || || Sbjct 310124 ATTCCTCCCGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGCCGCACT 310065 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | ||||| || |||| ||||| |||||||| || || || | ||||| ||||| Sbjct 310064 CTCTCGGACTACAACATCCAGAAGGAGTCCACTCTCCACCTCGTGCTCCGTCTGCGCGGC 310005 Query 27631 GG 27632 || Sbjct 310004 GG 310003 >seq2 Length=2907307 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || || ||||| || || || ||||| ||||| Sbjct 2173014 ATGCAGATCTTCGTGAAGACGCTCACGGGGAAGACGATCACGCTCGAGGTCGAGTCCTCC 2173073 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || ||||||||||||||||| || || || |||||| Sbjct 2173074 GACACCATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 2173133 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | |||||||| | || || || Sbjct 2173134 CAGCGCCTTATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGTACCCTTTCGGATTACAAC 2173193 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| || | ||||| |||||||| Sbjct 2173194 ATCCAGAAGGAGTCGACCCTCCATCTCGTGCTCCGTCTGCGCGGTGG 2173240 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||| | ||||||||||| || || | ||||| ||||| Sbjct 2173242 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACGATCACGTTGGAGGTCGAGTCGTCC 2173301 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| || | || ||||||| || ||||||||||||||||| Sbjct 2173302 GATACGATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGG 2173345 >seq6 Length=1546939 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || || ||||||||||| || || || || || ||||| |||||||||| || ||| Sbjct 1352717 ATCCCGCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACC 1352776 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | ||||| || |||| ||||| ||| || || || ||| ||||||||||||| Sbjct 1352777 CTTTCGGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTCCTGCGTCTTCGCGGC 1352836 Query 27631 GG 27632 || Sbjct 1352837 GG 1352838 >seq11 Length=779764 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || || ||||| || || || ||||||||||| Sbjct 380376 AATGCAGATCTTCGTCAAGACCCTGACGGGGAAGACGATCACCCTCGAGGTTGAGTCGTC 380435 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | || | ||| ||||||| || |||||||||||||| || Sbjct 380436 GGACACTATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAAGG 380480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308760357600