Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2 188 2e-42 seq7 176 1e-38 seq11 98.7 2e-15 seq6 96.9 8e-15 >seq2 Length=2907307 Score = 188 bits (208), Expect = 2e-42 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || ||||| || |||||||| ||||||| |||||| | || || Sbjct 2173225 AGCACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTCC 2173166 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||||||||| || |||||||| || | || ||||||||| Sbjct 2173165 TCAAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 2173106 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||||||||| ||| || |||||||| ||||||||| Sbjct 2173105 TGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGCGTGATCGTC 2173046 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 2173045 TTCCCCGTGAGCGTCTTCACGAAGATCTGCAT 2173014 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || ||||| ||||| |||||||| || |||||| Sbjct 2172833 CCCTCCTTGTCCTGGATCTTCGCCTTAACGTTGTCGATCGTGTCAGACGACTCGACCTCG 2172774 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| || || | |||||| Sbjct 2172773 AGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 2172730 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || || || ||||||||||| | || |||||| Sbjct 2172548 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCG 2172489 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| || || |||||||| || || | |||||| Sbjct 2172488 AGAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAAATCTGCAT 2172445 >seq7 Length=1356190 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || || ||||| || |||||||| ||||||| || || | || || Sbjct 309281 AGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCC 309340 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || |||||||| || | || ||||||||| Sbjct 309341 TCGAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 309400 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || |||||||||||||| || ||||| || ||||||||| Sbjct 309401 TGAATCTTCGCCTTCACATTGTCGATGGTGTCAGATGACTCGACCTCCAGGGTGATCGTC 309460 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 309461 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 309492 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || || | || || | ||||| Sbjct 309509 AGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTACGACCATCC 309568 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||||||||| || ||||||||||| | || ||||||||| Sbjct 309569 TCCAGCTGCTTCCCGGCGAAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 309628 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| ||| || |||||||| ||||| ||| Sbjct 309629 TGGATCTTGGCCTTCACGTTGTCGATCGTGTCTGAGGACTCGACCTCGAGGGTGATGGTC 309688 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 309689 TTCCCGGTCAAGGTCTTGACGAAGATCTGCAT 309720 Score = 163 bits (180), Expect = 7e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 210907 CAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA 210966 |||||||||| || ||||| || || ||||| || || | ||||| | || || |||| Sbjct 309057 CAAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCA 309116 Query 210967 GCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026 |||||||||| |||||||| ||||| || ||||| ||||||| || ||||| ||||||| Sbjct 309117 GCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCCTGGA 309176 Query 211027 TCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTC 211086 |||| || ||||| ||||| || || ||| ||||||||||| ||||||||||| | Sbjct 309177 TCTTCGCCTTGACGTTGTCGATCGTATCGGAGGACTCAACCTCGAGCGTGATCGTCTTGC 309236 Query 211087 CCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || | ||||| || || | ||||| Sbjct 309237 CGGTCAACGTCTTGACGAAGATTTGCAT 309264 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 || || || || ||||| || || ||||| || || | | || | ||||| || ||| Sbjct 309796 AGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGCCCATCCTCAAGC 309855 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 |||||||| || |||||||| || || ||||| || || | || ||||||||||||||| Sbjct 309856 TGCTTGCCAGCAAAGATAAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATC 309915 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || ||||| ||||||||||| || |||||||| || ||||| ||||| ||| Sbjct 309916 TTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCAACCTCAAGGGTGATGGTCTTGCCC 309975 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | |||||| Sbjct 309976 GTGAGGGTCTTAACGAAGATCTGCAT 310001 Score = 109 bits (120), Expect = 1e-18 Identities = 173/261 (66%), Gaps = 49/261 (19%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||||||||| || |||||||| || |||| || || | |||||| Sbjct 310018 AGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCT 310077 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA--CT---------- 211010 || ||||||||||| || ||||| ||||| || ||||| ||||||| || Sbjct 310078 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGAATGCTACGCCTTGAT 310137 Query 211011 -------------------------------------CCTTCCTTGTCCTGGATCTTTTG 211033 || ||||||||||||||||| Sbjct 310138 AAGCAACATACGACATCCGGACGTCGCGAACACGCACCCCTCCTTGTCCTGGATCTTGGC 310197 Query 211034 TTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 || || || ||||||||||| ||| ||||||||||||||||| ||||| || ||||| Sbjct 310198 CTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGAGTGATAGTCTTGCCGGTGAG 310257 Query 211094 AGTCTTTACAAACACCTGCAT 211114 ||||| ||||| | |||||| Sbjct 310258 GGTCTTGACAAAGATCTGCAT 310278 >seq11 Length=779764 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||| ||||| ||||| || ||||| ||||| || ||||||||| Sbjct 380480 CCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATAGTGTCCGACGACTCAACCTCG 380421 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||||||||| ||||| || ||||| || || | ||||||||| Sbjct 380420 AGGGTGATCGTCTTCCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 380374 >seq6 Length=1546939 Score = 96.9 bits (106), Expect = 8e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| ||||| || ||| ||| || |||||||| || |||| |||||| Sbjct 1352832 CGAAGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTG 1352773 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 | ||||| || ||||||||||| |||||||| ||||| || ||||| || || Sbjct 1352772 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGG 1352720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159148584123950