Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq7 96.9 3e-15 >seq2 Length=2907307 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||| || || || || ||||| | ||| || || |||| || Sbjct 2173223 CACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTCCTC 2173164 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| |||||||| || ||||| ||||||||||| | || | || ||| |||||| Sbjct 2173163 AAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 2173104 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| |||| ||| | | | || ||| ||||| || || | |||||| | | Sbjct 2173103 AATCTTCGCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGCGTGATCGTCT 2173045 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| ||||| || || ||||| ||||| Sbjct 2173044 TCCCCGTGAGCGTCTTCACGAAGATCTGCAT 2173014 >seq7 Length=1356190 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| ||| || || || || || |||| | || || | || |||||||| Sbjct 309798 ATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGCCCATCCTCAAGCTG 309857 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| ||||| ||||||||||||||||||| || | | ||| |||||| ||| || Sbjct 309858 CTTGCCAGCAAAGATAAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTT 309917 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | |||| ||| | | | || || |||||| || || | ||||| | || |||| Sbjct 309918 CGCCTTGA-CGTTGTCGATGGTGTCCGACGACTCAACCTCAAGGGTGATGGTCTTGCCCG 309976 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 | || || ||||| ||||| ||||| Sbjct 309977 TGAGGGTCTTAACGAAGATCTGCAT 310001 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || | || || || |||| || ||||| ||||| || || Sbjct 309073 CTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 309132 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||||| || | || ||| || ||| ||| ||| |||| ||| Sbjct 309133 GATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCCTGGATCTTCGCCTTGA-CGT 309191 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||||||| ||||| || || | |||||| | || || |||| ||| || | Sbjct 309192 TGTCGATCGTATCGGAGGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAACGTCTTGA 309251 Query 39272 CAAAGATTTGCAT 39284 | ||||||||||| Sbjct 309252 CGAAGATTTGCAT 309264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544395929990