Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7 107 1e-18 seq2 93.3 3e-14 >seq7 Length=1356190 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| ||||||||||| || || ||||| || || ||||| || || Sbjct 310001 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTTGAGTCGTCG 309942 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || ||| | ||||| || || Sbjct 309941 GACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 309882 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || || || || | ||||| || ||| |||||| Sbjct 309881 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGCACGTTGTCCGACTACAAC 309822 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 309821 ATTCAGAAGGAGTCGAC 309805 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| || || || || || | Sbjct 309492 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTGGAGGTCGAGTCATCT 309433 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || ||| ||||| || || | ||||| || || Sbjct 309432 GACACCATCGACAATGTGAAGGC-GAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCA 309374 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || || || |||| |||||| | |||||||| Sbjct 309373 GCAGCGTCTCATCTTCGCTGGGAAGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAA 309314 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 309313 CATCCAGAAGGAGTCGAC 309296 >seq2 Length=2907307 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || |||||||| || |||||||| ||||| || || ||| | Sbjct 2173014 ATGCAGATCTTCGTGAAGACGCTCACGGGGAAGACGATCACGCTCGAGGTCGAGTCCTCC 2173073 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| || || | ||||| || || Sbjct 2173074 GACACCATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 2173133 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC--TTTAGGCGATTACA 23788 ||||| | || || || ||||| || || || |||| || || ||| || |||||| Sbjct 2173134 CAGCGCCTTATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGTACCCTTTCGG--ATTACA 2173191 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 2173192 ACATCCAGAAGGAGTCGAC 2173210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008652516840