Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7 152 1e-31 seq2 125 2e-23 >seq7 Length=1356190 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| || || || || |||| |||||||| | | ||| | || || Sbjct 309281 AGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCC 309340 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||||||||||||||| || || || ||||| ||||| || || |||||||| Sbjct 309341 TCGAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 309400 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| ||||||||||| || | || || || | ||||||||| Sbjct 309401 TGAATCTTCGCCTTCACATTGTCGATGGTGTCAGATGACTCGACCTCCAGGGTGATCGTC 309460 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | ||||| Sbjct 309461 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 309492 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| || || || || |||| ||||| |||| | || | ||||| Sbjct 309509 AGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTACGACCATCC 309568 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| ||||||||||| || || ||||| || || || || |||||||| Sbjct 309569 TCCAGCTGCTTCCCGGCGAAGATAAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 309628 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||| |||||||||| || || || | ||||| ||| Sbjct 309629 TGGATCTTGGCCTTCACGTTGTCGATCGTGTCTGAGGACTCGACCTCGAGGGTGATGGTC 309688 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 309689 TTCCCGGTCAAGGTCTTGACGAAGATCTGCAT 309720 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 || || || || || || || || | ||||| |||| ||| || | |||||| || ||| Sbjct 309796 AGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGCCCATCCTCAAGC 309855 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| ||||| |||||||| || || ||||||||||| ||||| |||||||| |||||| Sbjct 309856 TGCTTGCCAGCAAAGATAAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATC 309915 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || ||||||||||| || | || || || | ||||| ||||||||| Sbjct 309916 TTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCAACCTCAAGGGTGATGGTCTTGCCC 309975 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 || | || || | ||| | ||||| Sbjct 309976 GTGAGGGTCTTAACGAAGATCTGCAT 310001 Score = 123 bits (136), Expect = 6e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| || || || || || || | ||||| || | | || | || || || | Sbjct 309057 CAAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCA 309116 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| || |||||||| || || || |||||||| ||||| || ||||| || |||| Sbjct 309117 GCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCCTGGA 309176 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| || ||||| || || |||| || || || | |||||||||||||| Sbjct 309177 TCTTCGCCTTGACGTTGTCGATCGTATCGGAGGACTCAACCTCGAGCGTGATCGTCTTGC 309236 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || || | ||| | |||||| Sbjct 309237 CGGTCAACGTCTTGACGAAGATTTGCAT 309264 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||||||||| || || |||| ||||| || | | ||| | |||||| Sbjct 310018 AGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCT 310077 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 || |||||||| || || ||||| || || || |||||||| ||||| Sbjct 310078 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGAAT 310124 >seq2 Length=2907307 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||| || || || || |||| |||||||| | | || | || || Sbjct 2173225 AGCACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTCC 2173166 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||||||||| || || ||||| ||||| || || |||||||| Sbjct 2173165 TCAAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 2173106 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||||||||| |||| || || || | |||||||||| Sbjct 2173105 TGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGCGTGATCGTC 2173046 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | || || | ||| | ||||| Sbjct 2173045 TTCCCCGTGAGCGTCTTCACGAAGATCTGCAT 2173014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192527685759620