Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 165 2e-35 seq7 147 5e-30 >seq2 Length=2907307 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || |||||||| |||||||| || ||| ||| Sbjct 2173017 CAGATCTTCGTGAAGACGCTCACGGGGAAGACGATCACGCTCGAGGTCGAGTCCTCCGAC 2173076 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| || || ||||| || |||||||| Sbjct 2173077 ACCATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 2173136 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||||| || || || | || ||| | ||||| ||| || Sbjct 2173137 CGCCTTATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGTACCCTTTCGGATTACAACATC 2173196 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 2173197 CAGAAGGAGTCGACCCTCCATCTCGT 2173222 >seq7 Length=1356190 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || ||||||||||| ||||| || || ||| Sbjct 309489 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTGGAGGTCGAGTCATCTGAC 309430 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||||||||||| || || ||||| || |||||||| Sbjct 309429 ACCATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 309370 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | ||||| | ||||| ||| || Sbjct 309369 CGTCTCATCTTCGCTGGGAAGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATC 309310 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 309309 CAGAAGGAGTCGACCCTCCACCTTGT 309284 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || |||||||||||||| || ||||||| Sbjct 309717 CAGATCTTCGTCAAGACCTTGACCGGGAAGACCATCACCCTCGAGGTCGAGTCCTCAGAC 309658 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| |||||||| || || |||||||| |||||||| Sbjct 309657 ACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 309598 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || ||||| || ||||| | || || |||| || ||| || Sbjct 309597 CGCCTTATCTTCGCCGGGAAGCAGCTGGAGGATGGTCGTACGCTCTCCGACTACAACATC 309538 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 309537 CAGAAGGAGTCTACCCTCCACCTCGT 309512 Score = 136 bits (150), Expect = 1e-26 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| ||||| || || ||| Sbjct 309998 CAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTTGAGTCGTCGGAC 309939 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 309938 ACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAGCAG 309879 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || ||||| || ||||| | || | |||| || ||| | Sbjct 309878 CGTCTTATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGCACGTTGTCCGACTACAACATT 309819 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || || || || |||||||| Sbjct 309818 CAGAAGGAGTCGACGCTGCATCT 309796 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || |||||||| |||||||| || ||| || Sbjct 309261 CAAATCTTCGTCAAGACGTTGACCGGCAAGACGATCACGCTCGAGGTTGAGTCCTCCGAT 309202 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| ||||| || || || || ||||| |||||||| Sbjct 309201 ACGATCGACAACGTCAAGGCGAAGATCCAGGATAAGGAGGGCATTCCTCCCGACCAGCAG 309142 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || | || || ||| | Sbjct 309141 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACCCTCTCTGACTACAACATT 309082 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 309081 CAGAAGGAGTCGACCCTTCACCTTG 309057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203727652754620