Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizophyllum_20commune_20[genbank_20GCA_5F001599475.1_202016-03-01] 230 sequences; 39,005,850 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2 156 4e-33 seq7 147 2e-30 seq6 125 7e-24 seq11 89.7 5e-13 >seq2 Length=2907307 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||| ||||| || || ||||||||| ||||| || || || Sbjct 2173240 CCACCGCGCAGACGGAGCACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 2173181 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||| ||||| || |||||||| ||||| | || Sbjct 2173180 AGGGTACGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCAGGCGGG 2173121 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || || | ||| | | | |||||| ||||| || Sbjct 2173120 ATGCCCTCCTTGTCC-TGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGAC 2173062 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || ||||| |||||||| ||||| |||||||| Sbjct 2173061 CTCGAGCGTGATCGTCTTCCCCGTGAGCGTCTTCACGAAGATCTGCAT 2173014 Score = 113 bits (124), Expect = 4e-20 Identities = 99/122 (81%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || || |||||||| ||||||||| ||||| |||||||| Sbjct 2172729 GCCGCCACGCAGACGGAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 2172670 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 || ||||| |||| |||||||||||||| || || ||||||||||| ||||| |||| Sbjct 2172669 CAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGG 2172610 Query 41754 GA 41755 || Sbjct 2172609 GA 2172608 Score = 102 bits (112), Expect = 8e-17 Identities = 96/121 (79%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| || || || || ||||||||||||||| ||||| ||| Sbjct 2173012 CCACCACGGAGGCGGAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAG 2172953 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 || |||||| | || |||||||||||||||||||| || || ||||| ||||| ||||| Sbjct 2172952 AGCGTGCGCCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGCGGG 2172893 Query 41755 A 41755 | Sbjct 2172892 A 2172892 Score = 100 bits (110), Expect = 3e-16 Identities = 96/122 (79%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || ||||| ||||||||||||||| ||||| || Sbjct 2173520 GCCCCCACGGAGACGAAGGACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCAGA 2173461 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 || ||||| |||| || | |||||| |||||||| ||||||||||| ||||| |||| Sbjct 2173460 AAGCGTGCGACCGTCCTCCAACTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGG 2173401 Query 41754 GA 41755 || Sbjct 2173400 GA 2173399 >seq7 Length=1356190 Score = 147 bits (162), Expect = 2e-30 Identities = 150/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| ||||| ||||||||||| |||| || ||||||||||||||||| Sbjct 309073 CTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 309132 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 ||||||||||| ||||| | |||| || |||||| ||| || | || || | ||| Sbjct 309133 GATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTATCC-TGGATCTTCGCCTTGACGT 309191 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | || ||| ||||| ||||| | ||| ||||| || || |||| |||||| | Sbjct 309192 TGTCGATCGTATCGGAGGACTCAACCTCGAGCGTGATCGTCTTGCCGGTCAACGTCTTGA 309251 Query 41850 CGAAAATCTGCAT 41862 |||| || ||||| Sbjct 309252 CGAAGATTTGCAT 309264 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || || ||||||||| ||||| || || ||| Sbjct 309266 CCACCGCGGAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAG 309325 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||||||||| || ||||| || || ||||| ||||| | || Sbjct 309326 AGAGTGCGACCGTCCTCGAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCAGGCGGG 309385 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || || | || | | | ||||| ||||| || Sbjct 309386 ATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACATTGTCGATGGTGTCAGATGACTCGAC 309444 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 309445 CTCCAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 309493 Score = 131 bits (144), Expect = 2e-25 Identities = 159/213 (75%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 41653 CACC-AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 |||| ||||||||||| ||||||||||||||| |||||||| | |||||| | || | Sbjct 309791 CACCGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGCCCATCCT 309850 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 | ||||||||||| || || || || ||||| ||||| | || | | |||||||||| Sbjct 309851 CAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCC- 309909 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 || | || || | ||| | | | ||||| |||||| ||||| | || || || Sbjct 309910 TGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCAACCTCAAGGGTGATGGTC 309969 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| || ||||| ||||| ||||||||| Sbjct 309970 TTGCCCGTGAGGGTCTTAACGAAGATCTGCATG 310002 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || || || || || ||||||||| ||||| |||||||| Sbjct 309493 GCCACCACGGAGGCGAAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 309552 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || | || || |||||||| |||||||| || |||||||| ||||| | || Sbjct 309553 GAGCGTACGACCATCCTCCAGCTGCTTCCCGGCGAAGATAAGGCGCTGCTGGTCAGGAGG 309612 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || |||| ||| | | | ||||| ||||| | Sbjct 309613 GATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTGTCGATCGTGTCTGAGGACTCGA 309671 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || |||| ||||| ||||| |||||||| Sbjct 309672 CCTCGAGGGTGATGGTCTTCCCGGTCAAGGTCTTGACGAAGATCTGCAT 309720 Score = 122 bits (134), Expect = 8e-23 Identities = 108/134 (81%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | ||| || || || ||| ||||||||| ||||| ||||| || Sbjct 310002 GCCGCCGCGCAGACGGAGCACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 310061 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || ||||||||||||||||| || ||||||||||| ||||| | || Sbjct 310062 GAGAGTGCGGCCATCTTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGG 310121 Query 41755 AACGCT-CTCCTTG 41767 || ||| | ||||| Sbjct 310122 AATGCTACGCCTTG 310135 >seq6 Length=1546939 Score = 125 bits (138), Expect = 7e-24 Identities = 101/121 (83%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | || || || || |||||||||||||| ||||| ||||| || Sbjct 1352838 CCGCCGCGAAGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAA 1352779 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 |||||||| | || |||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 1352778 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 1352719 Query 41755 A 41755 | Sbjct 1352718 A 1352718 >seq11 Length=779764 Score = 89.7 bits (98), Expect = 5e-13 Identities = 83/104 (80%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| || || || ||||||||| ||||| ||||| ||||| |||||| |||| || Sbjct 380638 CACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGCCCGTCCTC 380579 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGA 41755 |||||||||||| || || || || ||||| ||||| |||||| Sbjct 380578 GAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGGTCGGGCGGGA 380535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302670876000