Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3 100 3e-16 seq277 95.1 1e-14 >seq3 Length=549351 Score = 100 bits (110), Expect = 3e-16 Identities = 221/327 (68%), Gaps = 6/327 (2%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||| || | |||||||| | |||||| || ||||| || || Sbjct 261372 AGGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTG 261431 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || ||||| ||||| ||||| | ||| || || || ||||| || ||||| ||| Sbjct 261432 AGGCCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAG 261491 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || || ||||||| ||||||||||| | || |||||| | | | | ||| | Sbjct 261492 AAAATGCCTTCGACGGCGGCAAACGCGATGAGACGCTCGGCGAAGGATGAGCGCTTG-TC 261550 Query 17141 CGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 ||| ||||| | | |||| ||||| || | ||| | |||| || || || | ||| Sbjct 261551 CGAGATCCAGTGGAGAGCCCAGTCGGCCTTCTTCTTAACGCAAGGAATTGTCTCAACGGC 261610 Query 17200 --CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 | ||| ||| | || | | |||| | || || || |||||||| || Sbjct 261611 GTCGAAAAGGTATTCGCGTTGAGCGG--GGTCCTTGATGTATGTGTCGATGAGGAGCGAA 261668 Query 17258 TACATTTCGGAGTGTATGTTCTCCATG 17284 ||| | |||||||| ||||||||| || Sbjct 261669 TACGTCTCGGAGTGGATGTTCTCCCTG 261695 >seq277 Length=43962 Score = 95.1 bits (104), Expect = 1e-14 Identities = 316/487 (65%), Gaps = 6/487 (1%) Strand=Plus/Minus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 ||||||||| || || || ||||||||||| | | | ||||| || || ||| || Sbjct 18769 ATCCGCTACGAACTCGATGTATTGGCACATGAGTCGAGAATTCATCCCAATGAGAGACAC 18710 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917 || | || ||||| | ||| ||||| || | || || ||| ||| ||| | Sbjct 18709 GGGTAATGCATCCGTAAGGAATTCCTGCTCGATCAAGACGGCGTCCGCAATGATA-TCCA 18651 Query 16918 AACTCGTTCCTCGGAC---GGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATC 16974 || | || | || || || || || |||||| || | ||||| |||||||| Sbjct 18650 AAATTGTGGC-CGCACTTGGGCGTC-GTCGAAGATGACGGAAAAGGAGACACGCGAAATC 18593 Query 16975 GCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034 || | || ||||| | |||||| | |||||| ||| || | || |||||| Sbjct 18592 CGTGTGCATCCCTTCGTCGCGGCTGATCAACTCGTTACTAAAGGTGAGTCCTGGCATCAA 18533 Query 17035 TCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 ||| || ||||||| ||| || || || || || || || || || || || || || || Sbjct 18532 TCCCCGCTTCTTTAGCCAGAAGATGGCCGCAAAGGAACCCGAGAAAAAGATTCCTTCAAC 18473 Query 17095 GGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTG 17154 | || || || | || ||||| || ||| || ||| | ||||| | Sbjct 18472 CGCAGCGAAAGCCACCAAACGTTCTCCGAACGACGACCTGGTGTCAGATATCCAACGAAG 18413 Query 17155 CACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTC 17214 | |||||||||| || | ||| | ||| ||||| ||||| ||| ||| | || || Sbjct 18412 CGCCCACTCGGCCTTCTTCTTCACACAAGGGATCGTCTCTATCGCCGAAAAAAGTTGATC 18353 Query 17215 TTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTAT 17274 | | || | || | || || | |||||||| || || | ||||||||||| Sbjct 18352 TCTAGTCTCTTTCTCTTTGATGTAGGAGTCGATGAGGAGAGAATAAGTCTCGGAGTGTAT 18293 Query 17275 GTTCTCC 17281 ||||||| Sbjct 18292 GTTCTCC 18286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517537248107880