Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq277 118 1e-21 seq3 116 4e-21 seq1111 113 5e-20 seq57 107 2e-18 seq366 86.0 7e-12 >seq277 Length=43962 Score = 118 bits (130), Expect = 1e-21 Identities = 171/238 (72%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| |||||||| ||| | || ||||| | || || || ||||| ||| ||||| Sbjct 18604 ACACGCGAAATCCGTGTGCATCCCTTCGTCGCGGCTGATCAACTCGTTACTAAAGGTGAG 18545 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 ||| ||||| | || ||||| || ||||| || |||| |||||| || || || || || Sbjct 18544 TCCTGGCATCAATCCCCGCTTCTTTAGCCAGAAGATGGCCGCAAAGGAACCCGAGAAAAA 18485 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC--CGGC--GCTGTCAT 24309 |||||||| || || || || || | | | |||||| ||| || | | ||||| Sbjct 18484 GATTCCTTCAACCGCAGCGAAAGCCACCAAACGTTCTCCG-AACGACGACCTGGTGTCAG 18426 Query 24310 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 |||||| | ||||| ||||||||||| || |||||||| || |||||||| || Sbjct 18425 ATATCCAACGAAGCGCCCACTCGGCCTTCTTCTTCACACAAGGGATCGTCTCTATCGC 18368 >seq3 Length=549351 Score = 116 bits (128), Expect = 4e-21 Identities = 165/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| ||| ||| | |||||||| | || || | |||||| || ||||| Sbjct 261375 CAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTGAGG 261434 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || || ||||| || ||||| || |||| || || |||||||| |||||| Sbjct 261435 CCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAGAAA 261494 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA--ACCGGCGCT-GTCATGT 24311 || ||||| || || ||||| || || || | || | | | ||||| ||| Sbjct 261495 ATGCCTTCGACGGCGGCAAACGCGATGAGACGCTCGGCGAAGGATGAGCGCTTGTCCGAG 261554 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361 ||||| | ||||||| ||||||||||| || || ||||| |||||||| Sbjct 261555 ATCCAGTGGAGAGCCCAGTCGGCCTTCTTCTTAACGCAAGGAATTGTCTC 261604 >seq1111 Length=1418 Score = 113 bits (124), Expect = 5e-20 Identities = 217/319 (68%), Gaps = 7/319 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || |||||||| || | ||||| |||| ||| || | ||| ||| |||||||||| Sbjct 377 CAAGCGAAATCTGTATGCATTCCCTCATCTCGACTGATGAGTTCATTGCTAAACGTGAGT 436 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || || || ||||| ||||| || |||| || || || || || |||||| Sbjct 437 CCTGGCATAAGTCCCCGTTTTTTTAGCCAGAAGATGGCTGCGAAAGACCCCGAGAAGAAA 496 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT-----GTCAT 24309 |||||||| || |||||||| || | || | ||| | || | || | ||| Sbjct 497 ATTCCTTCGACAGCCGCAAACGCGACGAGACGTTCAGCGAAA--GTCGATTCCTCGTCCG 554 Query 24310 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 ||||| | ||||| || ||||| |||| || || | | |||||||||||| Sbjct 555 AAATCCATCGAAGTGCCCATTCAGCCTTTCTTTTAACGCATGATACTGTCTCTATAGCTG 614 Query 24370 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 || ||| ||| || | |||| || ||||| ||||| | ||| ||| Sbjct 615 AGAATAGACGCGCCCGTTCTGTATTTTCTTGAATATATGCATCAAGGAGAAGCGAGTACG 674 Query 24430 TTTCCGAATGAATGTTTTC 24448 |||||||||| || ||||| Sbjct 675 TTTCCGAATGGATATTTTC 693 Score = 86.0 bits (94), Expect = 7e-12 Identities = 164/237 (69%), Gaps = 11/237 (5%) Strand=Plus/Plus Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 || || || ||||||||||| | || || | ||||| || || |||| || | || Sbjct 756 ATCTGGAAGCCGTAGAAACAACGTGCTTCTGCGATCTGCACCTCGCTACAGAACCTCTCG 815 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA---AAAAACGCCAATACATGTTTT 24572 | | ||| ||||||||||| ||||| || |||| ||||| || | || || || Sbjct 816 ACAAGATTCTCATTCACTATCCCGTC---GGATGCAACGAAAAAAGCGAGAACGTGCTTG 872 Query 24573 ATAAAATATTTTTCGT-CTGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATAT 24628 || |||| ||| | | || | |||||| | |||||| ||||| || || | Sbjct 873 ATGAAATGACGTTCTTGATCGT-TGAGTTTATGCTGCCAATCCGCCATATCCTTCGAAAG 931 Query 24629 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 ||||| |||||| ||||||| || ||||||||| || || ||||| ||||| || Sbjct 932 ATCCATCTCTTCCGCTGTCCAGAAGCTTGCCTCTGCTTTCTTGTACATGTTCCATAT 988 >seq57 Length=175691 Score = 107 bits (118), Expect = 2e-18 Identities = 234/348 (67%), Gaps = 2/348 (1%) Strand=Plus/Minus Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 || || || || |||||| | || || || | || || |||| | || || ||||| Sbjct 69049 AGGCCAATACCTCCTGCCGTCTTCGAAATCATAGCACACTGTTTGAGTGTGTCGTAGATC 68990 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA-CATTTGGTGACGACT 54423 ||||| || || || ||| ||||| | || || || | || ||| ||| | Sbjct 68989 CCCTCGATGCTGTCGTCCTTCATGCATACGAGGAAGCA-CGAGCTCATCTGGGGGTTGGG 68931 Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||||||||| || | |||||| ||||| || || | || || | ||||| Sbjct 68930 AGTTCCCGCATTGAACATCGTAGGACTTGCGTGGGTGAAGAAGCGCTCGGACATGAGATT 68871 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 || ||||| |||||| || || || | |||||| || | ||||||||||| | Sbjct 68870 ATAGGTCTCAATAGCTCGTTCGATGTCGCGGCCATGAATACCAATAGCGACACGCATAAG 68811 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 ||||||||| ||||| || |||| ||| ||| || |||| | |||||| || | Sbjct 68810 CATGTGCTGGGGTCTCTCCGCGATTTTGCCGTTAATCTTCAAAAGGTAGGAACGCTCGAG 68751 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||| || ||||| || || | ||| ||||| || ||||| || || Sbjct 68750 AGTCTTGAAACCGAAGTATTGGTAATGGAAGTCACGGTCGTAGATGAT 68703 >seq366 Length=28123 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||||||| |||||||| ||| || ||||||||||| | || ||| | ||| ||| Sbjct 25429 AACATCAAGCATGCGAAGTCGGTATGCAGACCCTCGTCCCGACAAATGAGTTCTTTGCTG 25370 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || || || ||||| | || || || || ||| ||||||| | || || || || Sbjct 25369 AAAGTAAGACCTGGCATCAAACCGCGTTTCTTGAGCTAAAATATAGCTGCGAAGGAGCCC 25310 Query 24246 GAAAAGAAAATTCCTTCTAC 24265 || |||||| |||| ||||| Sbjct 25309 GAGAAGAAATTTCCCTCTAC 25290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593712018817680