Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq250 86.0 5e-12 >seq250 Length=49273 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || ||||| ||||| |||||||| | ||| || | | ||||| ||||| ||||| Sbjct 6028 GTCGATTCCTTCTGAATATTATAGTCAGAAAGGCTTCGTCCATCCTCGAGCTGCTTGCCA 5969 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | ||||||||| || | ||||||||||| ||||||| ||| Sbjct 5968 GCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTTTGACTTC 5909 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || || | ||| |||| || || ||||| || || ||||| Sbjct 5908 ACGTTGTCAATCGTGTCCGACGACTCGACCTCCAAAGTGATCGTCTTCCCTGTCAACGTC 5849 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 5848 TTGACAAAGATCTGCAT 5832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422252556147356