Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 268 1e-66 seq277 134 1e-26 seq1111 125 7e-24 seq366 125 7e-24 seq250 87.8 2e-12 >seq3 Length=549351 Score = 268 bits (296), Expect = 1e-66 Identities = 551/823 (67%), Gaps = 75/823 (9%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| || || ||||||||||| | ||||||| |||| || Sbjct 261981 ATTTGGCAAATGTACAAGAAGGCTGAAGCTTCGTTCTGGACTGCCGAGGAGATGGATCTT 261922 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||| || | || ||||||||||||||||| ||| ||| Sbjct 261921 TCCAAGGACCTCCACGACTGGCAGAACAAGTTAAACGACAACGAGCGCCACTTCGTCAGC 261862 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || || || || || ||||| || |||||| ||||| |||||||| || || ||||| Sbjct 261861 CATGTTCTTGCGTTCTTCGCTGCGTCCGACGGTATCGTAAACGAGAACCTTGTTGAGCGA 261802 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC------ 116866 ||| | || || || | || ||||| ||||||||||| || || || || Sbjct 261801 TTCAGCAACGAAGTTCAAGCTGCGGAGGCTCGGTGCTTCTATGGATTCCAAATTATGATG 261742 Query 116867 ----------------------------GC----------------CATGGAGAACGTGC 116882 || || ||||||| | | Sbjct 261741 TAAGTTTCGTTTCACTCACCTTTATTCAGCTTCTTACGGGGGTTTACAGGGAGAACATCC 261682 Query 116883 ACTCGGAAATGTATTCGACCCTCATCGACACGTACGTG--------CGCTCTTCGGAGGA 116934 |||| || | ||||||| |||||||||||| ||| | ||||| || Sbjct 261681 ACTCCGAGACGTATTCGCTCCTCATCGACACATACATCAAGGACCCCGCTCAACGC---- 261626 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 ||| | | ||| | ||||| | ||||| || || ||||| || |||||||||| || Sbjct 261625 GAA--TACCTTT--TCGACGCCGTTGAGACAATTCCTTGCGTTAAGAAGAAGGCCGACTG 261570 Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 ||| || | ||||||| | | || || | | |||||| |||||| || | || || | Sbjct 261569 GGCTCTCCACTGGATCTCGGACA-AGCGCTCATCCTTCGCCGAGCGTCTCATCGCGTTTG 261511 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 | |||||||| ||| | ||||| || || ||||| ||||| || ||||||||||| | Sbjct 261510 CCGCCGTCGAAGGCATTTTCTTCTCTGGATCCTTCGCTGCCATCTTCTGGCTCAAGAAGC 261451 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 | || |||||||| ||||| ||||||||||||||||||||| | | |||||||| ||| Sbjct 261450 GAGGGCTCATGCCTGGCCTCACTTTCAGCAACGAGCTCATCAGCCGTGACGAGGGCATGC 261391 Query 117174 ATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCG 117233 | |||||| ||||| | || |||| || | | ||| || | | | | || Sbjct 261390 ACACCGACTTCGCCTGCCTCCTTTTCAGCCACCTTCGCCGGCGCCCACACCCTGAGGTCG 261331 Query 117234 TCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGC 117293 | | ||||| | ||| || ||||| ||||||||| ||| | || || ||||| | Sbjct 261330 TACGCAAGATCATTGTCGATGCCGTCGCGATCGAGCAGGAGTTCTTAACGGATGCGCT-C 261272 Query 117294 CGGTGC-GTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGC 117351 | ||| || | || | || || |||| |||| ||||||||||||||||| || Sbjct 261271 CCTTGCTCGCTCATTGGCATGAA-CGCAAAACTCATGTGCCAATACATCGAGTTCGTTGC 261213 Query 117352 CGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAAC 117394 ||| | ||||| ||| ||| | || ||||||||||||| Sbjct 261212 TGACCGCCTGCTCGTCGCCTTGGGCAACGACAAGCACTACAAC 261170 >seq277 Length=43962 Score = 134 bits (148), Expect = 1e-26 Identities = 280/412 (68%), Gaps = 4/412 (1%) Strand=Plus/Plus Query 116954 GCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 || || |||||||| || || || || ||||||||||||||||||| || ||||| | Sbjct 18368 GCGATAGAGACGATCCCTTGTGTGAAGAAGAAGGCCGAGTGGGCGCTTCGTTGGATATCT 18427 Query 117014 GGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 | || ||| || | ||||| || || ||||||| ||||| || || || || |||| Sbjct 18428 GACA-CCAGGTCGTCGTTCGGAGAACGTTTGGTGGCTTTCGCTGCGGTTGAAGGAATCTT 18486 Query 117073 CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT 117132 || ||||| || || ||||| || ||||| ||||| || || | ||||| || || Sbjct 18487 TTTCTCGGGTTCCTTTGCGGCCATCTTCTGGCTAAAGAAGCGGGGATTGATGCCAGGACT 18546 Query 117133 GACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTT 117192 || || || |||||| | ||| | | ||||| || |||| || || || ||| | Sbjct 18547 CACCTTTAGTAACGAGTTGATCAGCCGCGACGAAGGGATGCACACGGATTTCGCGTGTCT 18606 Query 117193 GCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGA 117252 || ||| ||| | | || || || ||||| | ||| ||| | | || Sbjct 18607 CCTTTTCCGTCATCTTCGACGACGCCCAAGTGCGGCCACAATTTTGGATATCATTGCGGA 18666 Query 117253 CGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACT 117312 ||| ||| ||||||||| ||||| || || || | || ||| ||| | || | Sbjct 18667 CGCCGTCTTGATCGAGCAGGAATTCCTTACGGATGCATTACCCGTGTCTCTCATTGGGAT 18726 Query 117313 CAATT-GCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCT 117363 |||| ||| | |||| ||||||||||||||||| || || | ||||| Sbjct 18727 GAATTCTCGACTC-ATGTGCCAATACATCGAGTTCGTAGCGGATCGTCTGCT 18777 Score = 127 bits (140), Expect = 2e-24 Identities = 165/225 (73%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 116645 ATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGAC 116704 |||||||| |||||||| ||||| |||||||| | || || ||||| || ||||| || Sbjct 18003 ATGTACAAGAAGGCCGAAGCGTCTTTCTGGACAGCGGAAGAAGTGGATCTTTCCAAAGAT 18062 Query 116705 ACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTG 116761 | | | || ||| || |||| ||| |||| || || ||||||| ||||| || Sbjct 18063 ATGGGTGATTGGCGTGACAAGTTGAGCGATGACGAACGTCACTTCATCAGCCACGTCCTC 18122 Query 116762 GCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAG 116821 || || || ||||| || ||||| ||||||||||| |||||||| | ||| ||| Sbjct 18123 GCGTTCTTTGCCGCATCGGATGGCATAGTCAACGAGAACTTGGTCGAGAGATTC-AGCAG 18181 Query 116822 -GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGAT 116865 ||||| || || || || || || ||||| ||||| ||||| || Sbjct 18182 CGAGGTTCAAGTTGCTGAAGCTCGATGCTTTTACGGGTTTCAAAT 18226 >seq1111 Length=1418 Score = 125 bits (138), Expect = 7e-24 Identities = 168/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| ||||||||| || || ||||| |||||||| | || ||| |||| || Sbjct 988 ATATGGAACATGTACAAGAAAGCAGAGGCAAGCTTCTGGACAGCGGAAGAGATGGATCTT 929 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 || ||||| | | || ||| ||| | ||||| | || || |||||||||||| Sbjct 928 TCGAAGGATATGGCGGATTGGCAGCATAAACTCAACGATCAAGAACGTCATTTCATCAAG 869 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || ||||||| || |||||| || || || |||||||| |||||| | Sbjct 868 CACGTTCTCGCTTTTTTCGTTGCATCCGACGGGATAGTGAATGAGAATCTTGTCGAGAGG 809 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGAT 116865 ||| | ||||||||| | || || || || || ||||||||||| ||||| Sbjct 808 TTCTGTAGCGAGGTGCAGATCGCAGAAGCACGTTGTTTCTACGGCTTCCAGAT 756 >seq366 Length=28123 Score = 125 bits (138), Expect = 7e-24 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| || ||| | | || ||||| ||||| |||||| ||||| || ||||||| Sbjct 25273 TGGTCGCTTTCTCCGAGGTAGAGGGAAATTTCTTCTCGGGCTCCTTCGCAGCTATATTTT 25332 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 ||||||||||||||| | ||||| || || ||||||||||| || ||||| | ||| Sbjct 25333 AGCTCAAGAAACGCGGTTTGATGCCAGGTCTTACTTTCAGCAAAGAACTCATTTGTCGGG 25392 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 |||||||||||||| |||||| || || ||| |||||| Sbjct 25393 ACGAGGGTCTGCATACCGACTTCGCATGCTTGATGTTCA 25431 >seq250 Length=49273 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 40793 GCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCA 40852 ||||||| | |||||||| || ||||||| ||| || |||||||| || || | |||| Sbjct 4856 GCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCA 4915 Query 40853 CCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | | |||||||||||||||||||||| | ||||| || || || Sbjct 4916 GCTTGTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTTGT 4961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515210885650160