Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq250 105 6e-18 seq57 100 2e-16 seq1111 84.2 2e-11 >seq250 Length=49273 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 |||||||||||| || |||||| |||||||||||||||| |||||||| || || ||||| Sbjct 5987 ATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTT 5928 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 ||| || ||| || || | || | ||||||| ||||||||| | || | Sbjct 5927 GTCCTGGATCTTTGACTTCACGTTGTCAATCGTGTCCGACGACTCGACCTCCAAAGTGAT 5868 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || |||| || || ||||| |||||||| Sbjct 5867 CGTCTTCCCTGTCAACGTCTTGACAAAGATCTGCAT 5832 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| || |||| |||||| ||||| Sbjct 4956 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGCTGCGACCATCCTCAAGCTG 4897 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGC 118635 ||| |||||| |||||||||||||||| |||||||| |||| Sbjct 4896 TTTACCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGC 4856 >seq57 Length=175691 Score = 100 bits (110), Expect = 2e-16 Identities = 216/321 (67%), Gaps = 4/321 (1%) Strand=Plus/Minus Query 134388 TTCGAAATCAACGCGGACTCGTGTAGAGTCTTGTAAATGCCATCGACGCTGTCGTCCTTG 134447 |||||||||| || ||| | || || | ||| || || |||| |||||||||||| Sbjct 69028 TTCGAAATCATAGCACACTGTTTGAGTGTGTCGTAGATCCCCTCGATGCTGTCGTCCTTC 68969 Query 134448 ATGCTTTGCAGGAAACACGAACACATTTGTTGACGACGCGTACCCGCCGAAAACAGAGTC 134507 |||| | ||||| ||||| | ||| || | | || ||||| |||| || Sbjct 68968 ATGCATACGAGGAAGCACGAGCTCATCTGGGGGTTGGGAGTTCCCGCATTGAACATCGTA 68909 Query 134508 GGGCTCGCGTGCGTAAAG--GTGCCCAGACTCATCAACTGATATGTTTCAATGACGCTCT 134565 || || ||||| || ||| | || | ||| || | | ||| || ||||| | | | Sbjct 68908 GGACTTGCGTGGGTGAAGAAGCGCTCGGAC--ATGAGATTATAGGTCTCAATAGCTCGTT 68851 Query 134566 TAACGTCGTCGCCGTGAATGGCCAGAGCGACGCGCATGAGCATGTGTTGGGGTCTCTCCA 134625 | |||| ||| ||||| | | |||||| ||||| |||||||| |||||||||||| Sbjct 68850 CGATGTCGCGGCCATGAATACCAATAGCGACACGCATAAGCATGTGCTGGGGTCTCTCCG 68791 Query 134626 TGATCACGTCGTCGATTTTTAACAAATATCCATTGGTGAGGGTTTTGAAACCGAAATATT 134685 ||| | ||| || || || | || | ||| || ||||||||||| |||| Sbjct 68790 CGATTTTGCCGTTAATCTTCAAAAGGTAGGAACGCTCGAGAGTCTTGAAACCGAAGTATT 68731 Query 134686 TGTAATTGTAGTCTCTCTCGT 134706 ||||| | |||| | |||| Sbjct 68730 GGTAATGGAAGTCACGGTCGT 68710 >seq1111 Length=1418 Score = 84.2 bits (92), Expect = 2e-11 Identities = 258/390 (66%), Gaps = 17/390 (4%) Strand=Plus/Minus Query 44801 AGAAAGGCCGAATGGGCGAT--GAAGTATATTG-ACGATGAAAAGATAACTTTGGCCGAA 44857 |||||||| |||||||| | || | || | | |||| ||| || |||| || ||| Sbjct 585 AGAAAGGCTGAATGGGCACTTCGATGGATTTCGGACGAGGAATCGA---CTTTCGCTGAA 529 Query 44858 CGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTTCGGGGAGTTTTGCGGCGATA 44917 || | ||||| || || |||||||||| | ||||| |||||| ||| || || || Sbjct 528 CGTCTCGTCGCGTTTGCGGCTGTCGAAGGAATTTTCTTCTCGGGGTCTTTCGCAGCCATC 469 Query 44918 TTTTACATGAAAACCAAGGGAGTGATGCCCGGACTGACGTTTAGCAACGAATTGATTTCG 44977 || | | |||| |||| | ||||| ||||| ||||||||||| ||| | || Sbjct 468 TTCTGGCTAAAAAAACGGGGACTTATGCCAGGACTCACGTTTAGCAATGAACTCATCAGT 409 Query 44978 AGAGACGAAGGTCTGCACACCAACTTTGCCTGCC-TCTACT--ATAATACGAGA-GTCGA 45033 |||| || || |||| || | || || |||| |||| | || || ||| |||| Sbjct 408 CGAGATGAGGGAATGCATACAGATTTCGCTTGCCTTCTATTTCATCATCTTAGATGTCGT 349 Query 45034 TCAAAAGTTGGACGCGCCCACCGTCAACGACATGTTCTCCGAAGCCGTGGCCATCGAGAT 45093 | ||| || |||| || | | || | |||| |||||||| ||||| | Sbjct 348 CCGAAA--TG--CGCG---GTGGTACTCAAAATCGTTACCGAGGCCGTGGCTATCGAAAA 296 Query 45094 GGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGGTGGGAATGAACGCGAATATGATGAG 45153 ||| ||| | | || || | || | || | | || ||||| ||| ||||| | Sbjct 295 GGAGTTTCTGGTCGATGCCTTACCTGTCTCTCTCATTGGTATGAATGCGCGACTGATGTG 236 Query 45154 AAAGTACATTGAGTTTGTCGCCGATCGTCT 45183 |||| || |||||||| || ||||| || Sbjct 235 CGAGTATATCGAGTTTGTGGCAGATCGACT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433823574085372