Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq250 105 8e-18 >seq250 Length=49273 Score = 105 bits (116), Expect = 8e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||| || |||| || | || | || || |||||||| |||||||| Sbjct 6022 TCCTTCTGAATATTATAGTCAGAAAGGCTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAG 5963 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||||| || | | ||||||||| ||| ||| || | ||| Sbjct 5962 ATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTTTGACTTCA-CGTT 5904 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| ||| || || || | ||||| || || || || | |||||| || Sbjct 5903 GTCAATCGTGTCCGACGACTCGACCTCCAAAGTGATCGTCTTCCCTGTCAACGTCTTGAC 5844 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 5843 AAAGATCTGCAT 5832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571808372293480