Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq250 89.7 4e-13 >seq250 Length=49273 Score = 89.7 bits (98), Expect = 4e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||| |||||| ||||||||| | || || ||||| ||||||||||| Sbjct 2958 CTCCTTCTGAATGTTATAGTCGGAAAGTTGGCGACCATCCTCGAGTTGCTTTCCGGCGAA 2899 Query 45205 TATCAACCGCTGTTGGTCGGGAGG 45228 || | |||||||||||||| || Sbjct 2898 GATGAGGCGCTGTTGGTCGGGTGG 2875 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||||| || ||||| || || | || || || || Sbjct 6035 GTGGAGCGTCGATTCCTTCTGAATATTATAGTCAGAAAGGCTTCGTCCATCCTCGAGCTG 5976 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | ||||| ||||||||||| | || ||||||||| || || Sbjct 5975 CTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTT 5916 Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 | ||| | || | || | ||||| ||| ||||||| || |||||||| || | Sbjct 5915 TGACTTCA-CGTTGTCAATCGTGTCCGACGACTCGACCTCCAAAGTGATCGTCTTCCCTG 5857 Query 45312 TCAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||||| |||||||| ||||| Sbjct 5856 TCAACGTCTTGACAAAGATCTGCAT 5832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395068983862111