Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq57 150 2e-31 seq3 127 2e-24 seq277 104 2e-17 seq1111 102 7e-17 seq250 98.7 9e-16 seq366 96.9 3e-15 >seq57 Length=175691 Score = 150 bits (166), Expect = 2e-31 Identities = 261/378 (69%), Gaps = 11/378 (3%) Strand=Plus/Minus Query 22504 TGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCAT 22563 |||| | || ||||| | || ||||| || || ||||| |||||||| || ||||| Sbjct 70321 TGTGTATGGCTCGAAGCACTCGTTGTTACCGAGGATCTGGCTTGTCGAAGCAGTTGGCAT 70262 Query 22564 CGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGA 22623 ||||| | ||||||||||||| ||| || || | || || ||||||| || Sbjct 70261 AGGCGCGACGAGTAGCGAGTTTCGCAAACCAGTCTGCGCGATCTTGGCCTTGAGCGAAGA 70202 Query 22624 CCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCG 22683 ||||||||| ||| || || ||| | |||||| |||||| || ||| ||| | Sbjct 70201 CCAGTCCCAGAGAGAAGAGGGTTCCAC---GCCCCACAAATCGTACTGTAACTTGCCCTG 70145 Query 22684 ACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT 22743 ||| ||||||||||||||||| || ||||| || |||| | || |||| |||| || Sbjct 70144 ACTTGCCGGGCTGCCTTCGTATGTCTCGTAGGGTCCATCGACAGCAGCAATGTCGCTACT 70085 Query 22744 CGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTC----GGCGG 22799 || || | || ||| || || ||||| ||||| || ||||||||| | | Sbjct 70084 TGCTTCAAGGGCAGCGTGGTAGATCGTCTCAAAGATCTTGACGTTCAATTCTCGAGCTTG 70025 Query 22800 CGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGC 22859 ||||| ||| | |||||||| | || ||| | ||| || | ||||| | || Sbjct 70024 AGGCGA----GTCGAAGGGCATACGAAGGGACATGAAGGTGTCGGCTAATCCCTGGATGC 69969 Query 22860 CTATACCGATCGGTCGGT 22877 | |||||||| || |||| Sbjct 69968 CAATACCGATGGGACGGT 69951 Score = 134 bits (148), Expect = 1e-26 Identities = 232/337 (69%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || ||||| ||| ||||| ||||| || || ||||| || ||||||||||| ||| Sbjct 69046 CCAATACCTCCTGCCGTCTTCGAAATCATAGCACACTGTTTGAGTGTGTCGTAGATCCCC 68987 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 ||||||||||| || || | || | ||| ||||| ||| || | ||||| || Sbjct 68986 TCGATGCTGTCGTCCTTCATGCATACGAGGAAGCACGAGCTCATCTGGGGGTTGGGAGTT 68927 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803 | || ||||| || || || ||||| || ||| | | | ||||| ||||| || Sbjct 68926 CCCGCATTGAACATCGTAGGACTTGCGTGGGTGAAGAAGCGCTCGGACATGAGATTATAG 68867 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863 || || || || || ||||| || || ||||| || ||||| ||||| | |||| Sbjct 68866 GTCTCAATAGCTCGTTCGATGTCGCGGCCATGAATACCAATAGCGACACGCATAAGCATG 68807 Query 23864 TATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923 | || |||||||| | | ||||||||| || || || || ||||| | | || Sbjct 68806 TGCTGGGGTCTCTCCGCGATTTTGCCGTTAATCTTCAAAAGGTAGGAACGCTCGAGAGTC 68747 Query 23924 TTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 || || || || || | || | |||||||| |||| Sbjct 68746 TTGAAACCGAAGTATTGGTAATGGAAGTCACGGTCGT 68710 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 ||||| || || |||||||| |||||||| || || || ||||| | || ||||| || Sbjct 69366 AAAAGGTCAGGGATCCATAGCGCGTAGAAAAGATCTCGAGCGCGAGCTTCTTCTTTTCCA 69307 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||| | || | || || || ||||| || ||||| ||||| | ||| | Sbjct 69306 TGGTTCTTACGAAGGTCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCCATGTAGATT 69247 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || || || || | |||||| || || || ||||||||||| || || | ||| Sbjct 69246 GCGAAAGCTCCTGGACGCTTATTACCACCTTGGTCGACGTAACGAGCGGTCGCATCGTAG 69187 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||| ||||||||||| | ||||| || Sbjct 69186 GCTCGAAGCATCGGCACAATGCCGTTTGA 69158 >seq3 Length=549351 Score = 127 bits (140), Expect = 2e-24 Identities = 229/329 (70%), Gaps = 18/329 (5%) Strand=Plus/Minus Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG-- 57864 || ||| | || || || | ||||||||| |||||||| || ||| | |||||| || Sbjct 261691 GAGAACATCCACTCCGAGACGTATTCGCTCCTCATCGACACATACATCAAGGACCCCGCT 261632 Query 57865 --ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGG 57921 ||| ||| || || ||| |||| | || ||||| || ||| | ||||||| Sbjct 261631 CAACGCGAA---TAC-CTTTTCGACGCCGTTGAGACAATTCCTTGCGTTAAG-AAGAAGG 261577 Query 57922 CAGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTA 57977 | || ||| | || | ||||| | |||||| | | ||||||||| | || Sbjct 261576 CCGACTGGGCTCTCCACTGGATCTCGGACAAGCGCT----CATCCTTCGCCGAGCGTCTC 261521 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 |||||||| |||||||||||||| || ||||| || || ||| || || || || ||| Sbjct 261520 ATCGCGTTTGCCGCCGTCGAAGGCATTTTCTTCTCTGGATCCTTCGCTGCCATCTTCTGG 261461 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 | ||||| || || || ||||| ||||| || || ||||||||| | || || ||| Sbjct 261460 CTCAAGAAGCGAGGGCTCATGCCTGGCCTCACTTTCAGCAACGAGCTCATCAGCCGTGAC 261401 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCT 58126 ||||| | || || || || || ||||| Sbjct 261400 GAGGGCATGCACACCGACTTCGCCTGCCT 261372 >seq277 Length=43962 Score = 104 bits (114), Expect = 2e-17 Identities = 169/241 (70%), Gaps = 7/241 (3%) Strand=Plus/Plus Query 57562 ATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAG 57621 || || | || ||| | |||||||| ||||| ||||| || || ||||| | ||||||| Sbjct 17986 ATTCACAGATATGGGAGATGTACAAGAAGGCCGAAGCGTCTTTCTGGACAGCGGAAGAAG 18045 Query 57622 TAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATT 57678 | || || || || ||| || | |||||| | | | | || || | | | Sbjct 18046 TGGATCTTTCCAAAGATATGGGTGATTGGCGTGACAAGTTGAGCGATGACGAACGTCACT 18105 Query 57679 TTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGG 57738 | || | ||||| | ||||| || |||||||| ||||| || || |||||||| |||| Sbjct 18106 TCATCAGCCACGTCCTCGCGTTCTTTGCCGCATCGGATGGCATAGTCAACGAGAACTTGG 18165 Query 57739 TCGAAAGATTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 |||| ||||| || || | || ||||| | || || ||||||||||||| ||||| Sbjct 18166 TCGAGAGATT--CAGCAGCGAGGTTCAAGTTGCTGAAGCTCGATGCTTTTACGGGTTTCA 18223 Query 57797 A 57797 | Sbjct 18224 A 18224 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||| || || ||||| || || || ||||| ||||||||| || || ||| | Sbjct 18461 GCTTTCGCTGCGGTTGAAGGAATCTTTTTCTCGGGTTCCTTTGCGGCCATCTTCTGGCTA 18520 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| || || ||||||| || || || ||||| ||||||||||| |||||||| Sbjct 18521 AAGAAGCGGGGATTGATGCCAGGACTCACCTTTAGTAACGAGTTGATCAGCCGCGACGAA 18580 Query 58101 GGTCTCCATACTGATTTTGCGTGCCT 58126 || | || || ||||| ||||| || Sbjct 18581 GGGATGCACACGGATTTCGCGTGTCT 18606 >seq1111 Length=1418 Score = 102 bits (112), Expect = 7e-17 Identities = 252/376 (67%), Gaps = 10/376 (3%) Strand=Plus/Minus Query 57960 ACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGC 58019 || ||||| || | || ||||||| || || |||||||| || ||||| ||||| Sbjct 540 ACTTTCGCTGAACGTCTCGTCGCGTTTGCGGCTGTCGAAGGAATTTTCTTCTCGGGGTCT 481 Query 58020 TTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079 || || || || || ||| | || ||||| || || ||||| || || ||||||||||| Sbjct 480 TTCGCAGCCATCTTCTGGCTAAAAAAACGGGGACTTATGCCAGGACTCACGTTTAGCAAT 421 Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCA- 58138 || | || || || ||||| | ||||| ||||| || ||||| | || | ||| Sbjct 420 GAACTCATCAGTCGAGATGAGGGAATGCATACAGATTTCGCTTGCCT--TCTA-TTTCAT 364 Query 58139 CATTGTCAA--TAAACCG--ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCG 58194 ||| | | | ||| | ||| | | | | | | || | |||||||| || | Sbjct 363 CATCTTAGATGTCGTCCGAAATGCGCGGTGG--TACTCAAAATCGTTACCGAGGCCGTGG 306 Query 58195 CGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATG 58254 | |||||||| |||||| | ||| ||| |||| || | | | |||||||| Sbjct 305 CTATCGAAAAGGAGTTTCTGGTCGATGCCTTACCTGTCTCTCTCATTGGTATGAATGCGC 246 Query 58255 ATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAG 58314 |||||| |||| || |||||||| || || |||| ||||||| || || | | Sbjct 245 GACTGATGTGCGAGTATATCGAGTTTGTGGCAGATCGACTATTGCTCGCCCTAATGGATG 186 Query 58315 AGCGTCATTACAACAC 58330 || |||||||||| Sbjct 185 TTCGATATTACAACAC 170 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 57563 TCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGT 57622 |||| | || |||||||||||||| || ||||| ||| || ||||| | ||||| | Sbjct 995 TCCACAGATATGGAACATGTACAAGAAAGCAGAGGCAAGCTTCTGGACAGCGGAAGAGAT 936 Query 57623 AGACCTGTCTAAGGATCTGAGCGATTG---GGATTCCCTCAAAGAATCTGAGAGAAATTT 57679 || || || |||||| || ||||| | || ||||| || || | |||| Sbjct 935 GGATCTTTCGAAGGATATGGCGGATTGGCAGCATAAACTCAACGATCAAGAACGTCATTT 876 Query 57680 TATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 || || ||||| | || ||||||| |||||||| || || || || |||||| | || Sbjct 875 CATCAAGCACGTTCTCGCTTTTTTCGTTGCATCCGACGGGATAGTGAATGAGAATCTTGT 816 Query 57740 CGAAAGATT 57748 ||| || || Sbjct 815 CGAGAGGTT 807 >seq250 Length=49273 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||||| || |||||||| | || || || |||| Sbjct 5832 ATGCAGATCTTTGTCAAGACGTTGACAGGGAAGACGATCACTTTGGAGGTCGAGTCGTCG 5891 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || || ||| | |||||||||||| | || |||||||| Sbjct 5892 GACACGATTGACAACGTGAAGTCAAAGA-TCCAGGACAAGGAAGGAATTCCTCCCGACCA 5950 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGATTAT 31369 ||||||||| || ||||||||||| ||| | || || | | | || | || ||| Sbjct 5951 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGACGAAGCCTTT--CTGACTAT 6008 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || ||||| || |||||||| || || || || ||| Sbjct 6009 AATATTCAGAAGGAATCGACGCTCCACCTTGTCCTT 6044 >seq366 Length=28123 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 |||| ||| ||| || || || | ||||| |||||| ||| || || ||||||| | Sbjct 25276 TCGCTTTCTCCGAGGTAGAGGGAAATTTCTTCTCGGGCTCCTTCGCAGCTATATTTTAGC 25335 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 | ||||||||||| ||||||| || || || || ||||| || | || | || |||| Sbjct 25336 TCAAGAAACGCGGTTTGATGCCAGGTCTTACTTTCAGCAAAGAACTCATTTGTCGGGACG 25395 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGT 58131 ||||||| ||||| || || || ||| | |||| Sbjct 25396 AGGGTCTGCATACCGACTTCGCATGCTTGATGT 25428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445759206444720