Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq277 123 3e-23 seq57 123 3e-23 seq3 113 6e-20 seq1111 100 4e-16 seq366 86.0 8e-12 >seq277 Length=43962 Score = 123 bits (136), Expect = 3e-23 Identities = 172/238 (72%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| |||||||| ||||| || ||||| | || || || |||||| ||| ||||| Sbjct 18604 ACACGCGAAATCCGTGTGCATCCCTTCGTCGCGGCTGATCAACTCGTTACTAAAGGTGAG 18545 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 ||| ||||| | || ||||| || ||||| || |||| || || || || || || || Sbjct 18544 TCCTGGCATCAATCCCCGCTTCTTTAGCCAGAAGATGGCCGCAAAGGAACCCGAGAAAAA 18485 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGC--GCTGTCAT 33756 ||||||||| || ||||| || || | | | ||||| ||| || | | ||||| Sbjct 18484 GATTCCTTCAACCGCAGCGAAAGCCACCAAACGTTCTCC-GAACGACGACCTGGTGTCAG 18426 Query 33757 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 |||||| | ||||| ||||||||||| || |||||||| ||||| ||||| || Sbjct 18425 ATATCCAACGAAGCGCCCACTCGGCCTTCTTCTTCACACAAGGGATCGTCTCTATCGC 18368 >seq57 Length=175691 Score = 123 bits (136), Expect = 3e-23 Identities = 245/360 (68%), Gaps = 2/360 (1%) Strand=Plus/Minus Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 || || || || |||||| | || || || | || || |||| | ||||| ||||| Sbjct 69049 AGGCCAATACCTCCTGCCGTCTTCGAAATCATAGCACACTGTTTGAGTGTGTCGTAGATC 68990 Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA-CATTTGGTGACGAGT 63661 || || ||||| || || ||||| | || || || | || ||| ||| | | Sbjct 68989 CCCTCGATGCTGTCGTCCTTCATGCATACGAGGAAGCA-CGAGCTCATCTGGGGGTTGGG 68931 Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||||||||| || | |||||| ||||| || || | || || | ||||| Sbjct 68930 AGTTCCCGCATTGAACATCGTAGGACTTGCGTGGGTGAAGAAGCGCTCGGACATGAGATT 68871 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 || |||||||||||| || || || | |||||| || | ||||||||||| | Sbjct 68870 ATAGGTCTCAATAGCTCGTTCGATGTCGCGGCCATGAATACCAATAGCGACACGCATAAG 68811 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||||||||| ||||| || | |||||| ||| || ||||| | |||||| || | Sbjct 68810 CATGTGCTGGGGTCTCTCCGCGATTTTGCCGTTAATCTTCAAAAGGTAGGAACGCTCGAG 68751 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 ||| || ||||| || || | ||| ||||| || ||||| || || | |||| ||| Sbjct 68750 AGTCTTGAAACCGAAGTATTGGTAATGGAAGTCACGGTCGTAGATGATCGCGGAATCGAG 68691 >seq3 Length=549351 Score = 113 bits (124), Expect = 6e-20 Identities = 168/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| ||||| |||||||| | || || | ||||| || ||||| Sbjct 261375 CAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTGAGG 261434 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| || |||| |||||| ||||| || ||||| Sbjct 261435 CCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAGAAA 261494 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGCT-GTCATGT 33758 || ||||| || || ||||| || || || | ||| | | | ||||| ||| Sbjct 261495 ATGCCTTCGACGGCGGCAAACGCGATGAGACGCTCGGCGAAGGATGAGCGCTTGTCCGAG 261554 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 ||||| | ||||||| ||||||||||| || || ||||| || || || | ||| Sbjct 261555 ATCCAGTGGAGAGCCCAGTCGGCCTTCTTCTTAACGCAAGGAATTGTCTCAACGGC 261610 >seq1111 Length=1418 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || |||||||| |||| ||||| |||| ||| || | ||| || |||||||||| Sbjct 377 CAAGCGAAATCTGTATGCATTCCCTCATCTCGACTGATGAGTTCATTGCTAAACGTGAGT 436 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || || ||||| ||||| || |||| ||||| || || || ||||| Sbjct 437 CCTGGCATAAGTCCCCGTTTTTTTAGCCAGAAGATGGCTGCGAAAGACCCCGAGAAGAAA 496 Query 33702 ATTCCTTCTACTGCAGCAAAGGC 33724 |||||||| || || ||||| || Sbjct 497 ATTCCTTCGACAGCCGCAAACGC 519 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/237 (70%), Gaps = 11/237 (5%) Strand=Plus/Plus Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 ||||| || ||||||||||| | || || | |||||||| || |||| || | || Sbjct 756 ATCTGGAAGCCGTAGAAACAACGTGCTTCTGCGATCTGCACCTCGCTACAGAACCTCTCG 815 Query 33963 GCTAAATTTTCATTCACTATTCCATCACTGGCTGCA---AAAAACGCCAATACATGTTTT 34019 | | ||| ||||||||||| || || || |||| ||||| || | || || || Sbjct 816 ACAAGATTCTCATTCACTATCCCGTC---GGATGCAACGAAAAAAGCGAGAACGTGCTTG 872 Query 34020 ATAAAATATTTTTCGT-CTGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATAT 34075 || |||| ||| | | || | |||||| | |||||| ||||| || || | Sbjct 873 ATGAAATGACGTTCTTGATCGT-TGAGTTTATGCTGCCAATCCGCCATATCCTTCGAAAG 931 Query 34076 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 ||||| |||||| ||||||| || ||||||||| || || ||||| ||||| || Sbjct 932 ATCCATCTCTTCCGCTGTCCAGAAGCTTGCCTCTGCTTTCTTGTACATGTTCCATAT 988 >seq366 Length=28123 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||||||| |||||||| ||| |||||||||||||| | || ||| | ||| || Sbjct 25429 AACATCAAGCATGCGAAGTCGGTATGCAGACCCTCGTCCCGACAAATGAGTTCTTTGCTG 25370 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| | || || || || ||| ||||||| | ||||| || || Sbjct 25369 AAAGTAAGACCTGGCATCAAACCGCGTTTCTTGAGCTAAAATATAGCTGCGAAGGAGCCC 25310 Query 33693 GAAAAGAAGATTCCTTCTAC 33712 || ||||| |||| ||||| Sbjct 25309 GAGAAGAAATTTCCCTCTAC 25290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629807436318480