Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq57 116 5e-21 seq3 116 5e-21 seq277 109 7e-19 seq1111 105 9e-18 seq366 86.0 8e-12 >seq57 Length=175691 Score = 116 bits (128), Expect = 5e-21 Identities = 236/348 (68%), Gaps = 2/348 (1%) Strand=Plus/Minus Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 || || || || |||||| | || || || | || || |||| | || || ||||| Sbjct 69049 AGGCCAATACCTCCTGCCGTCTTCGAAATCATAGCACACTGTTTGAGTGTGTCGTAGATC 68990 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA-CATTTGGTGACGACT 66454 ||||| || || || ||| ||||| | || || || | || ||| ||| | Sbjct 68989 CCCTCGATGCTGTCGTCCTTCATGCATACGAGGAAGCA-CGAGCTCATCTGGGGGTTGGG 68931 Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||||||||| || | |||||| ||||| || || | || || | ||||| Sbjct 68930 AGTTCCCGCATTGAACATCGTAGGACTTGCGTGGGTGAAGAAGCGCTCGGACATGAGATT 68871 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 || |||||||||||| || || || | |||||| || | ||||||||||| | Sbjct 68870 ATAGGTCTCAATAGCTCGTTCGATGTCGCGGCCATGAATACCAATAGCGACACGCATAAG 68811 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 ||||||||| ||||| || |||| ||| ||| || ||||| | |||||| || | Sbjct 68810 CATGTGCTGGGGTCTCTCCGCGATTTTGCCGTTAATCTTCAAAAGGTAGGAACGCTCGAG 68751 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||| || ||||| || || | ||| ||||| || ||||| || || Sbjct 68750 AGTCTTGAAACCGAAGTATTGGTAATGGAAGTCACGGTCGTAGATGAT 68703 >seq3 Length=549351 Score = 116 bits (128), Expect = 5e-21 Identities = 165/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| ||| ||| | |||||||| | || || | |||||| || ||||| Sbjct 261375 CAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTGAGG 261434 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || ||||| || || ||||| || ||||| || |||| || || |||||||| |||||| Sbjct 261435 CCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAGAAA 261494 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCACT-GTCATGT 36334 || ||||| || || ||||| || || || | ||| | | | || || ||| Sbjct 261495 ATGCCTTCGACGGCGGCAAACGCGATGAGACGCTCGGCGAAGGATGAGCGCTTGTCCGAG 261554 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384 ||||| | ||||||| ||||||||||| || || ||||| |||||||| Sbjct 261555 ATCCAGTGGAGAGCCCAGTCGGCCTTCTTCTTAACGCAAGGAATTGTCTC 261604 >seq277 Length=43962 Score = 109 bits (120), Expect = 7e-19 Identities = 168/238 (71%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| |||||||| ||| | || ||||| | || || || ||||| ||| ||||| Sbjct 18604 ACACGCGAAATCCGTGTGCATCCCTTCGTCGCGGCTGATCAACTCGTTACTAAAGGTGAG 18545 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 ||| ||||| | || ||||| || ||||| || |||| |||||| || || || || || Sbjct 18544 TCCTGGCATCAATCCCCGCTTCTTTAGCCAGAAGATGGCCGCAAAGGAACCCGAGAAAAA 18485 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC----TGTCAT 36332 |||||||| || || || || || | | | ||||| ||| || ||||| Sbjct 18484 GATTCCTTCAACCGCAGCGAAAGCCACCAAACGTTCTCCG-AACGACGACCTGGTGTCAG 18426 Query 36333 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 |||||| | ||||| ||||||||||| || |||||||| || |||||||| || Sbjct 18425 ATATCCAACGAAGCGCCCACTCGGCCTTCTTCTTCACACAAGGGATCGTCTCTATCGC 18368 >seq1111 Length=1418 Score = 105 bits (116), Expect = 9e-18 Identities = 215/317 (68%), Gaps = 3/317 (1%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || |||||||| || | ||||| |||| ||| || | ||| ||| |||||||||| Sbjct 377 CAAGCGAAATCTGTATGCATTCCCTCATCTCGACTGATGAGTTCATTGCTAAACGTGAGT 436 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || ||||| || || || ||||| ||||| || |||| || || || || || |||||| Sbjct 437 CCTGGCATAAGTCCCCGTTTTTTTAGCCAGAAGATGGCTGCGAAAGACCCCGAGAAGAAA 496 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC-TCCATAACCG--GCACTGTCATGT 36334 |||||||| || |||||||| || | || | || | | | || | ||| Sbjct 497 ATTCCTTCGACAGCCGCAAACGCGACGAGACGTTCAGCGAAAGTCGATTCCTCGTCCGAA 556 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 ||||| | ||||| || ||||| |||| || || | | |||||||||||| Sbjct 557 ATCCATCGAAGTGCCCATTCAGCCTTTCTTTTAACGCATGATACTGTCTCTATAGCTGAG 616 Query 36395 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 36454 || ||| ||| || | |||| || ||||| ||||| | ||| ||| || Sbjct 617 AATAGACGCGCCCGTTCTGTATTTTCTTGAATATATGCATCAAGGAGAAGCGAGTACGTT 676 Query 36455 TCCGAATGAATGTTTTC 36471 |||||||| || ||||| Sbjct 677 TCCGAATGGATATTTTC 693 Score = 89.7 bits (98), Expect = 7e-13 Identities = 166/238 (70%), Gaps = 13/238 (5%) Strand=Plus/Plus Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 36538 || || || ||||||||||| | || || | ||||| || || |||| || | || Sbjct 756 ATCTGGAAGCCGTAGAAACAACGTGCTTCTGCGATCTGCACCTCGCTACAGAACCTCTCG 815 Query 36539 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA---AAAAACGCCAATACATGTTTT 36595 | | ||| ||||||||||| ||||| || |||| ||||| || | || || || Sbjct 816 ACAAGATTCTCATTCACTATCCCGTC---GGATGCAACGAAAAAAGCGAGAACGTGCTTG 872 Query 36596 ATAAAATATTTTTCGTTTGGT-GTT-AGTTTA---TTCCAATCATTGATATCTTTAGATA 36650 || |||| ||| ||| | ||| |||||| | |||||| ||||| || || | Sbjct 873 ATGAAATGACGTTC--TTGATCGTTGAGTTTATGCTGCCAATCCGCCATATCCTTCGAAA 930 Query 36651 TATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 36708 ||||| |||||| ||||||| || ||||||||| || || ||||| ||||| || Sbjct 931 GATCCATCTCTTCCGCTGTCCAGAAGCTTGCCTCTGCTTTCTTGTACATGTTCCATAT 988 >seq366 Length=28123 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||||||| |||||||| ||| || ||||||||||| | || ||| | ||| ||| Sbjct 25429 AACATCAAGCATGCGAAGTCGGTATGCAGACCCTCGTCCCGACAAATGAGTTCTTTGCTG 25370 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || || || ||||| | || || || || ||| ||||||| | || || || || Sbjct 25369 AAAGTAAGACCTGGCATCAAACCGCGTTTCTTGAGCTAAAATATAGCTGCGAAGGAGCCC 25310 Query 36269 GAAAAGAAAATTCCTTCTAC 36288 || |||||| |||| ||||| Sbjct 25309 GAGAAGAAATTTCCCTCTAC 25290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658162178736440