Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq277 86.0 4e-12 seq3 86.0 4e-12 >seq277 Length=43962 Score = 86.0 bits (94), Expect = 4e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 |||| | |||| || || || |||||||| || | || || || || ||||||||||| Sbjct 18451 ACGTTTGGTGGCTTTCGCTGCGGTTGAAGGAATCTTTTTCTCGGGTTCCTTTGCGGCCAT 18510 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 |||||||| ||||| || | |||||||| | | ||| ||||||||||| || Sbjct 18511 CTTCTGGCTAAAGAAGCGGGGATTGATGCCAGGACTCACCTTTAGTAACGAGTTGATCAG 18570 Query 22860 CCGTGACGAAGG 22871 ||| |||||||| Sbjct 18571 CCGCGACGAAGG 18582 >seq3 Length=549351 Score = 86.0 bits (94), Expect = 4e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 |||||| | || ||||| || || |||||| | | || ||||| || || || ||||| Sbjct 261526 CGTCTCATCGCGTTTGCCGCCGTCGAAGGCATTTTCTTCTCTGGATCCTTCGCTGCCATC 261467 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||||| ||||| || ||||||||| || | | || ||||||| | || ||| Sbjct 261466 TTCTGGCTCAAGAAGCGAGGGCTCATGCCTGGCCTCACTTTCAGCAACGAGCTCATCAGC 261407 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 |||||||| || | ||| ||||| || || Sbjct 261406 CGTGACGAGGGCATGCACACCGACTTCGCCTG 261375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356227994998273