Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1111 102 8e-17 seq277 96.9 3e-15 >seq1111 Length=1418 Score = 102 bits (112), Expect = 8e-17 Identities = 262/395 (66%), Gaps = 23/395 (6%) Strand=Plus/Minus Query 52566 AAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGTCT 52625 ||||| ||| |||||| | |||||| |||| || | ||||| || |||||||| Sbjct 583 AAAGGCTGAATGGGCACTTCGATGGATTTCGGACGAGGAATCGACTTTCGCTGAACGTCT 524 Query 52626 GGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTA 52685 ||||||||||| || ||||| | || || ||||| ||| || || || || | Sbjct 523 CGTCGCGTTTGCGGCTGTCGAAGGAATTTTCTTCTCGGGGTCTTTCGCAGCCATCTTCTG 464 Query 52686 CATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGA 52745 | |||| ||| | ||||| || |||||||||||||| || | || || || Sbjct 463 GCTAAAAAAACGGGGACTTATGCCAGGACTCACGTTTAGCAATGAACTCATCAGTCGAGA 404 Query 52746 CGAAGGAATGCACACAGATTTTGCGTG-TTTGTATTATAATACGCGCGTTAAAGAAAAAT 52804 || |||||||| |||||||| || || || |||| | || | ||| | Sbjct 403 TGAGGGAATGCATACAGATTTCGCTTGCCTTCTATT-TCAT---CATCTTAGA------- 355 Query 52805 TGTCATATGAAA-------AAATTCTAGACATGTTTAAAGAGGCCGTCGACATTGAAAAA 52857 |||| | |||| | || | || ||| |||||||| | || ||||| Sbjct 354 TGTCGTCCGAAATGCGCGGTGGTACTCAAAATCGTTACCGAGGCCGTGGCTATCGAAAAG 295 Query 52858 GAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAA--CGCGACCATGATGT 52915 |||||| | || || ||||| || || | | || ||||| |||||| |||||| Sbjct 294 GAGTTTCTGGTCGATGCCTTACCTGTCTCTCTCATTGGTATGAATGCGCGAC--TGATGT 237 Query 52916 GCGAGTACATCGAGTTTGTTGCGGACAGACTGTTG 52950 ||||||| ||||||||||| || || |||| ||| Sbjct 236 GCGAGTATATCGAGTTTGTGGCAGATCGACTATTG 202 >seq277 Length=43962 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 52618 GAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCA 52677 |||||| |||| || || ||| || ||||| | ||||| |||||| |||||||| Sbjct 18449 GAACGTTTGGTGGCTTTCGCTGCGGTTGAAGGAATCTTTTTCTCGGGTTCCTTTGCGGCC 18508 Query 52678 ATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATA 52737 || || | | || | ||| | ||||| || ||||| ||||| ||||||||||| Sbjct 18509 ATCTTCTGGCTAAAGAAGCGGGGATTGATGCCAGGACTCACCTTTAGTAACGAGTTGATC 18568 Query 52738 TCGCGCGACGAAGGAATGCACACAGATTTTGCGTGT 52773 ||||||||||| |||||||| ||||| |||||| Sbjct 18569 AGCCGCGACGAAGGGATGCACACGGATTTCGCGTGT 18604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496055994767200