Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq277 120 4e-22 seq57 116 5e-21 seq3 113 6e-20 seq1111 111 2e-19 seq366 91.5 2e-13 >seq277 Length=43962 Score = 120 bits (132), Expect = 4e-22 Identities = 170/237 (72%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| |||||||| ||||| || ||||| | || || | ||||| ||| ||||| Sbjct 18604 ACACGCGAAATCCGTGTGCATCCCTTCGTCGCGGCTGATCAACTCGTTACTAAAGGTGAG 18545 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 ||| ||||| | || ||||| || ||||| || |||| |||||| || || || || || Sbjct 18544 TCCTGGCATCAATCCCCGCTTCTTTAGCCAGAAGATGGCCGCAAAGGAACCCGAGAAAAA 18485 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACTGGC-GCTGTCATG 50135 ||||||||| || || || || || || | | ||||| | || | | ||||| Sbjct 18484 GATTCCTTCAACCGCAGCGAAAGCCACCAAACGTTCTCCGAACGACGACCTGGTGTCAGA 18425 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 |||||| | ||||| ||||||||||| || |||||||| ||||| ||||| || Sbjct 18424 TATCCAACGAAGCGCCCACTCGGCCTTCTTCTTCACACAAGGGATCGTCTCTATCGC 18368 >seq57 Length=175691 Score = 116 bits (128), Expect = 5e-21 Identities = 236/348 (68%), Gaps = 2/348 (1%) Strand=Plus/Minus Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 || || || || |||||| | || || || | || || |||| | || || ||||| Sbjct 69049 AGGCCAATACCTCCTGCCGTCTTCGAAATCATAGCACACTGTTTGAGTGTGTCGTAGATC 68990 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGA-CATTTGGTGACGACT 80333 ||||| ||||| || || ||||| | || || || | || ||| ||| | Sbjct 68989 CCCTCGATGCTGTCGTCCTTCATGCATACGAGGAAGCA-CGAGCTCATCTGGGGGTTGGG 68931 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||||||||| || | |||||| ||||| || || | || |||| ||||| Sbjct 68930 AGTTCCCGCATTGAACATCGTAGGACTTGCGTGGGTGAAGAAGCGCTCGGACATGAGATT 68871 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 || |||||||||||| ||| || || | |||||| || | ||||||||||| | Sbjct 68870 ATAGGTCTCAATAGCTCGTTCGATGTCGCGGCCATGAATACCAATAGCGACACGCATAAG 68811 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||| ||||| || |||| ||| || || ||||| | ||| || || | Sbjct 68810 CATGTGCTGGGGTCTCTCCGCGATTTTGCCGTTAATCTTCAAAAGGTAGGAACGCTCGAG 68751 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||| || ||||| || || | ||| ||||| || ||||| || || Sbjct 68750 AGTCTTGAAACCGAAGTATTGGTAATGGAAGTCACGGTCGTAGATGAT 68703 >seq3 Length=549351 Score = 113 bits (124), Expect = 6e-20 Identities = 169/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| ||||| |||||||| | || || || |||||| || ||||| Sbjct 261375 CAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTGAGG 261434 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || || ||||| || ||||| || |||| || || || ||||| ||||| Sbjct 261435 CCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAGAAA 261494 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAAC-TG-GCGCT-GTCATGT 50136 || ||||| || |||||||| || | || | ||| | | || ||||| ||| Sbjct 261495 ATGCCTTCGACGGCGGCAAACGCGATGAGACGCTCGGCGAAGGATGAGCGCTTGTCCGAG 261554 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 ||||| | ||||||| ||||||||||| || || ||||| || || || | ||| Sbjct 261555 ATCCAGTGGAGAGCCCAGTCGGCCTTCTTCTTAACGCAAGGAATTGTCTCAACGGC 261610 >seq1111 Length=1418 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || |||||||| |||| ||||| |||| ||| || ||||| ||| |||||||||| Sbjct 377 CAAGCGAAATCTGTATGCATTCCCTCATCTCGACTGATGAGTTCATTGCTAAACGTGAGT 436 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || || || ||||| ||||| || |||| || || ||||| || ||||| Sbjct 437 CCTGGCATAAGTCCCCGTTTTTTTAGCCAGAAGATGGCTGCGAAAGACCCCGAGAAGAAA 496 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 |||||||| || || ||||| || || || Sbjct 497 ATTCCTTCGACAGCCGCAAACGCGACGAG 525 Score = 100 bits (110), Expect = 4e-16 Identities = 167/237 (70%), Gaps = 11/237 (5%) Strand=Plus/Plus Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA 50340 ||||| || ||||||||||| | || || | |||||||| || |||| || | || Sbjct 756 ATCTGGAAGCCGTAGAAACAACGTGCTTCTGCGATCTGCACCTCGCTACAGAACCTCTCG 815 Query 50341 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA---AAAAACGCCAATACATGTTTT 50397 | | ||| ||||||||||| ||||| || |||| ||||| || | || || || Sbjct 816 ACAAGATTCTCATTCACTATCCCGTC---GGATGCAACGAAAAAAGCGAGAACGTGCTTG 872 Query 50398 ATAAAATGTTTTTCGTTGGGTGTT-AGTTTA---TTCCAATCATTGATATCTTTAGATAT 50453 || ||||| ||| ||| ||| |||||| | |||||| ||||| || || | Sbjct 873 ATGAAATGACGTTC-TTGATCGTTGAGTTTATGCTGCCAATCCGCCATATCCTTCGAAAG 931 Query 50454 ATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 50510 ||| | |||||| ||||||| || ||||||||| || || ||||| ||||| || Sbjct 932 ATCCATCTCTTCCGCTGTCCAGAAGCTTGCCTCTGCTTTCTTGTACATGTTCCATAT 988 >seq366 Length=28123 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||||||| |||||||| ||| |||||||||||||| | || ||| ||||| ||| Sbjct 25429 AACATCAAGCATGCGAAGTCGGTATGCAGACCCTCGTCCCGACAAATGAGTTCTTTGCTG 25370 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || || || ||||| | || || || || ||| ||||||| | || || || || Sbjct 25369 AAAGTAAGACCTGGCATCAAACCGCGTTTCTTGAGCTAAAATATAGCTGCGAAGGAGCCC 25310 Query 50071 GAAAAGAAGATTCCTTCTAC 50090 || ||||| |||| ||||| Sbjct 25309 GAGAAGAAATTTCCCTCTAC 25290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718257208937240