Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq57 114 2e-20 seq277 109 7e-19 seq1111 105 9e-18 seq3 100 4e-16 seq366 86.0 8e-12 >seq57 Length=175691 Score = 114 bits (126), Expect = 2e-20 Identities = 243/360 (68%), Gaps = 2/360 (1%) Strand=Plus/Minus Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 || || || || |||||| | || || || | || || |||| | || || ||||| Sbjct 69049 AGGCCAATACCTCCTGCCGTCTTCGAAATCATAGCACACTGTTTGAGTGTGTCGTAGATC 68990 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA-CATTTGGTGACGACT 72416 ||||| || || || ||| ||||| | || || || | || ||| ||| | Sbjct 68989 CCCTCGATGCTGTCGTCCTTCATGCATACGAGGAAGCA-CGAGCTCATCTGGGGGTTGGG 68931 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||||||||| || | |||||| ||||| || || | || |||| ||||| Sbjct 68930 AGTTCCCGCATTGAACATCGTAGGACTTGCGTGGGTGAAGAAGCGCTCGGACATGAGATT 68871 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 || |||||||||||| ||| || || | ||| || || | ||||||||||| | Sbjct 68870 ATAGGTCTCAATAGCTCGTTCGATGTCGCGGCCATGAATACCAATAGCGACACGCATAAG 68811 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| ||||| ||||| || |||| ||| || || ||||| | |||||| || | Sbjct 68810 CATGTGCTGGGGTCTCTCCGCGATTTTGCCGTTAATCTTCAAAAGGTAGGAACGCTCGAG 68751 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 ||| || ||||| || || | ||| ||||| || ||||| || || | |||| ||| Sbjct 68750 AGTCTTGAAACCGAAGTATTGGTAATGGAAGTCACGGTCGTAGATGATCGCGGAATCGAG 68691 >seq277 Length=43962 Score = 109 bits (120), Expect = 7e-19 Identities = 169/238 (71%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| |||||||| ||||| || || || | || || || ||||| ||| ||||| Sbjct 18604 ACACGCGAAATCCGTGTGCATCCCTTCGTCGCGGCTGATCAACTCGTTACTAAAGGTGAG 18545 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 ||| ||||| | || ||||| || ||||| || || | |||||| || || || || || Sbjct 18544 TCCTGGCATCAATCCCCGCTTCTTTAGCCAGAAGATGGCCGCAAAGGAACCCGAGAAAAA 18485 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGC--ACTGTCAT 42239 ||||||||| || || || || || | | | ||||| ||| || | ||||| Sbjct 18484 GATTCCTTCAACCGCAGCGAAAGCCACCAAACGTTCTCC-GAACGACGACCTGGTGTCAG 18426 Query 42240 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 |||||| | ||||| ||||||||||| || |||||||| ||||| ||||| || Sbjct 18425 ATATCCAACGAAGCGCCCACTCGGCCTTCTTCTTCACACAAGGGATCGTCTCTATCGC 18368 >seq1111 Length=1418 Score = 105 bits (116), Expect = 9e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || |||||||| |||| |||||||||| ||| || | ||| ||| |||||||||| Sbjct 377 CAAGCGAAATCTGTATGCATTCCCTCATCTCGACTGATGAGTTCATTGCTAAACGTGAGT 436 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || || || ||||| ||||| || || | || || || || || ||||| Sbjct 437 CCTGGCATAAGTCCCCGTTTTTTTAGCCAGAAGATGGCTGCGAAAGACCCCGAGAAGAAA 496 Query 42185 ATTCCTTCTACTGCCGCAAAGGC 42207 |||||||| || |||||||| || Sbjct 497 ATTCCTTCGACAGCCGCAAACGC 519 >seq3 Length=549351 Score = 100 bits (110), Expect = 4e-16 Identities = 165/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| ||||| ||||| || | || || | |||||| || ||||| Sbjct 261375 CAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTGAGG 261434 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || || ||||| || ||||| || || | || || |||||||| ||||| Sbjct 261435 CCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAGAAA 261494 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCACT-GTCATGT 42241 || ||||| || || ||||| || || || | ||| | | | || || ||| Sbjct 261495 ATGCCTTCGACGGCGGCAAACGCGATGAGACGCTCGGCGAAGGATGAGCGCTTGTCCGAG 261554 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 ||||| | ||||||| ||||||||||| || || ||||| || || || | ||| Sbjct 261555 ATCCAGTGGAGAGCCCAGTCGGCCTTCTTCTTAACGCAAGGAATTGTCTCAACGGC 261610 >seq366 Length=28123 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||||||| |||||||| ||| ||||||||||| || | || ||| | ||| ||| Sbjct 25429 AACATCAAGCATGCGAAGTCGGTATGCAGACCCTCGTCCCGACAAATGAGTTCTTTGCTG 25370 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || || || ||||| | || || || || ||| ||||||||| || || || || Sbjct 25369 AAAGTAAGACCTGGCATCAAACCGCGTTTCTTGAGCTAAAATATAGCTGCGAAGGAGCCC 25310 Query 42176 GAAAAGAAGATTCCTTCTAC 42195 || ||||| |||| ||||| Sbjct 25309 GAGAAGAAATTTCCCTCTAC 25290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671128369491160