Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq277 114 2e-20 seq3 111 2e-19 seq91 84.2 3e-11 >seq277 Length=43962 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426 || ||||| | |||| | |||| ||||| |||| || ||| |||| || || | Sbjct 18395 AAGAAGGCCGAGTGGGCGCTTCGTTGGATATCTGACACCAGGTCGTCGTTCGGAGAACGT 18454 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 ||||||| ||||| || || || || ||||| || |||||| |||||||||||||| Sbjct 18455 TTGGTGGCTTTCGCTGCGGTTGAAGGAATCTTTTTCTCGGGTTCCTTTGCGGCCATCTTC 18514 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTAT 125539 ||||| |||||||| ||| | ||||| ||||| || ||||||||||| || Sbjct 18515 TGGCTAAAGAAGCGGGGATTGATGCCAGGACTCACCTTTAGTAACGAGTTGAT 18567 >seq3 Length=549351 Score = 111 bits (122), Expect = 2e-19 Identities = 246/361 (68%), Gaps = 16/361 (4%) Strand=Plus/Minus Query 125403 GACAAG---TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459 |||||| || || | |||||| | || | || || |||||||| || ||||| ||| Sbjct 261550 GACAAGCGCTCATCCTTCGCCGAGCGTCTCATCGCGTTTGCCGCCGTCGAAGGCATTTTC 261491 Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519 || || || || || |||||||| |||||||||||||| || |||||||| || || Sbjct 261490 TTCTCTGGATCCTTCGCTGCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCTGGCCTC 261431 Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579 || ||| |||||| | || || ||||||||| | ||| ||||| ||| || Sbjct 261430 ACTTTCAGCAACGAGCTCATCAGCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTC 261371 Query 125580 CTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATT 125639 || || || | | || || || | | || | || | | | | | || | |||| Sbjct 261370 CTTTT---CAGCCACCTTCG-CCGGCGCCCACACCCTGAGGTCGTACG--CAAGATCATT 261317 Query 125640 GTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC--GGTCAGCA 125697 || ||||||||| ||| || || ||||| |||| || | || || | || || Sbjct 261316 GT---CGATGCCGTCGCGATCGAGCAGGAGTTCTTAACGGATGCGCTCCCTTGCTC-GC- 261262 Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757 | |||||||||||| || || |||||| | ||||| ||||| || || || || || | Sbjct 261261 TCATTGGCATGAACGCAAAACTCATGTGCCAATACATCGAGTTCGTTGCTGACCGCCTGC 261202 Query 125758 T 125758 | Sbjct 261201 T 261201 Score = 91.5 bits (100), Expect = 2e-13 Identities = 170/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| |||||| | || || || ||||| | ||| ||| | ||||| Sbjct 261981 ATTTGGCAAATGTACAAGAAGGCTGAAGCTTCGTTCTGGACTGCCGAGGAGATGGATCTT 261922 Query 125079 TCCAAGGACCTGTACGATTGGGAG-ACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||||||||||| |||| ||| || || ||| || || | ||||| | || | Sbjct 261921 TCCAAGGACCTCCACGACTGGCAGAACAAGTTAAAC-GACAACGAGCGCCACTTCGTCAG 261863 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACAC 125196 || || | || ||||| || | ||||| || ||||| ||||| || | |||||| | Sbjct 261862 CCATGTTCTTGCGTTCTTCGCTGCGTCCGACGGTATCGTAAACGAGAACCTTGTTGA-GC 261804 Query 125197 GATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 ||||| | | |||| | | | |||| |||||| || ||||||||||| ||| Sbjct 261803 GATTCAGCAACGAAGTTCA-AGCTGCGGAGGCTCGGTGCTTCTATGGATTCCAAATTATG 261745 Query 125256 AT 125257 || Sbjct 261744 AT 261743 >seq91 Length=137126 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 70045 CGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCA 70104 |||||| ||| || | | ||||| || || || || ||||| || ||||| ||| | || Sbjct 118089 CGGCTTGACCCACCGTCGCGAGGGTGACCTCGGACCCGTGTATGGCTTCCAATGGCGACA 118148 Query 70105 CTCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT 70164 || || | ||||||| |||||||| | ||||| || || || || || ||||| | Sbjct 118149 CTTCGGTGCGCAGTATGTTGACTGCGATGCCGACTACTCTGGCCAAGGGGTGGATCAGCT 118208 Query 70165 GCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTC 70224 || |||| | ||||| | || ||||||||| | ||| | ||| || | Sbjct 118209 CAAGGAGGTCATCCGTAAAATCAAGGAAGACCCGACAGATAGGCGTATCATCATGAGCGC 118268 Query 70225 ATGGAATCCTGCAG 70238 |||||||||||||| Sbjct 118269 ATGGAATCCTGCAG 118282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741047241157160