Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq250 114 3e-20 seq1111 84.2 5e-11 >seq250 Length=49273 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||| |||||||||||||||||||| || ||| || || Sbjct 6044 AAGGACAAGGTGGAGCGTCGATTCCTTCTGAATATTATAGTCAGAAAGGCTTCGTCCATC 5985 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| || || ||||| |||||||| || || Sbjct 5984 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTC 5925 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||||| || || || || | || || | || ||||| | || || || Sbjct 5924 CTGGATCTTTGACTTCACGTTGTCAATCGTGTCCGACGACTCGACCTCCAAAGTGATCGT 5865 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | || || ||||| |||||||| Sbjct 5864 CTTCCCTGTCAACGTCTTGACAAAGATCTGCAT 5832 >seq1111 Length=1418 Score = 84.2 bits (92), Expect = 5e-11 Identities = 182/268 (68%), Gaps = 7/268 (3%) Strand=Plus/Minus Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAAC 269029 |||||||| ||||| || | |||| || | | ||| | ||||| | || || | Sbjct 693 GAAAATATCCATTCGGAAACGTACTCGCTTCTCCTTGATGCATATATTCAAGAAAATACA 634 Query 269030 GAAAAGAAAAGACTATTTTCTTCTAT-GAGA-ACTATGGACTGTGTGAGaaaaaaaTCTG 269087 ||| | | ||||| || |||| |||| | ||| || || | || ||| ||| Sbjct 633 GAACGGGCGCGTCTATTCTCAGCTATAGAGACAGTATCA--TGCGTTAAAAGAAAGGCTG 576 Query 269088 AATGGGCTCTGAAATGGATAA---ACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTT 269144 ||||||| || |||||| |||| || ||| || ||| | | || || | Sbjct 575 AATGGGCACTTCGATGGATTTCGGACGAGGAATCGACTTTCGCTGAACGTCTCGTCGCGT 516 Query 269145 TTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGA 269204 |||| ||||| ||||| || ||||| ||||||||||| || || ||||| ||| | || | Sbjct 515 TTGCGGCTGTCGAAGGAATTTTCTTCTCGGGGTCTTTCGCAGCCATCTTCTGGCTAAAAA 456 Query 269205 AAAGAGGCCTTATGCCAGGATTAACTTT 269232 || | || |||||||||||| | || || Sbjct 455 AACGGGGACTTATGCCAGGACTCACGTT 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151379354791028