Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq18 98.7 2e-16 seq2 98.7 2e-16 >seq18 Length=246705 Score = 98.7 bits (108), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| || ||||| ||||| ||||| |||||||| || |||||| | || Sbjct 38762 AGGTATCACAAAGCCTGCCATCCGCCGTCTCGCTCGCCGTGGTGGTGTGAAGCGTATTTC 38821 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 || | |||| || |||| |||| |||| |||||||||||||| ||| ||| Sbjct 38822 CGGCCTCATCTACGAGGAGACCCGTGGTGTTCTGAAGATCTTCCTCGAGAACGT 38875 Score = 93.3 bits (102), Expect = 7e-15 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| || ||||| ||||| ||||| |||||||| || |||||| | || Sbjct 4017 AGGTATCACAAAGCCTGCCATCCGCCGTCTCGCTCGCCGTGGTGGTGTGAAGCGTATTTC 3958 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 || | | || || |||| |||| |||| |||||||||||||| ||| ||| Sbjct 3957 CGGCCTCATTTACGAGGAGACCCGTGGTGTTCTGAAGATCTTCCTCGAGAACGT 3904 >seq2 Length=791969 Score = 98.7 bits (108), Expect = 2e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 || ||||| || || |||||||||||||| ||||||||| ||||||| | |||||||| Sbjct 274987 GCCATCCGCCGCCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTTATCTATGAA 274928 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTAT 16606 |||| || | ||| ||||||||||||| ||| | ||||| || || || || Sbjct 274927 GAGACCCGCGGCGTTCTGAAGATCTTCCTGGAGAACATTATCAGAGACTCTGTCACATAC 274868 Query 16607 ACCGAGCACGCTAAACG 16623 || ||||| ||||| || Sbjct 274867 ACTGAGCATGCTAAGCG 274851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074019629663