Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq57 132 1e-25 seq1111 111 4e-19 seq3 96.9 9e-15 >seq57 Length=175691 Score = 132 bits (146), Expect = 1e-25 Identities = 181/252 (72%), Gaps = 8/252 (3%) Strand=Plus/Plus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 || ||||| ||| | |||||||| ||||||||||| ||| ||| || | || || Sbjct 68799 CCCCAGCACATGCTTATGCGTGTCGCTATTGGTATTCATGGCCGCGACATCGAACGAGCT 68858 Query 363514 ATTGAAACATATAAGCT----TCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAAT 363569 ||||| || ||||| || || || ||| | ||||| ||||| | || || || Sbjct 68859 ATTGAGACCTATAATCTCATGTCCGAGCGCT----TCTTCACCCACGCAAGTCCTACGAT 68914 Query 363570 GTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGA 363629 || |||||| ||||||| || || |||||| || ||||| || || |||||||| Sbjct 68915 GTTCAATGCGGGAACTCCCAACCCCCAGATGAGCTCGTGCTTCCTCGTATGCATGAAGGA 68974 Query 363630 CGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGC 363689 ||| ||||||||| |||| |||||||| || | |||||| | ||||| |||| || Sbjct 68975 CGACAGCATCGAGGGGATCTACGACACACTCAAACAGTGTGCTATGATTTCGAAGACGGC 69034 Query 363690 AGGCGGAATTGG 363701 ||| || ||||| Sbjct 69035 AGGAGGTATTGG 69046 >seq1111 Length=1418 Score = 111 bits (122), Expect = 4e-19 Identities = 160/225 (71%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 22433 TTAAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGG 22489 |||| | ||||| || ||||| || |||||| | || | ||| | ||||| | Sbjct 590 TTAAAAGAAAGGCTGAATGGGCACTTCGATGGATTTCGGACGAGGAATCGACTTTCGCTG 531 Query 22490 AACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAA 22549 ||||||| | || ||||| | || ||||| |||||||| || || | || || | Sbjct 530 AACGTCTCGTCGCGTTTGCGGCTGTCGAAGGAATTTTCTTCTCGGGGTCTTTCGCAGCCA 471 Query 22550 TCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTA 22609 |||| |||||||||||||| | | ||||||| || || |||||| ||||| | || | Sbjct 470 TCTTCTGGCTAAAAAAACGGGGACTTATGCCAGGACTCACGTTTAGCAATGAACTCATCA 411 Query 22610 GCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATC 22654 | ||||||||||| | ||||| ||||| || || | |||| || Sbjct 410 GTCGAGATGAGGGAATGCATACAGATTTCGCTTGCCTTCTATTTC 366 >seq3 Length=549351 Score = 96.9 bits (106), Expect = 9e-15 Identities = 155/219 (71%), Gaps = 13/219 (6%) Strand=Plus/Minus Query 22433 TTAAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCAT---TCG 22486 ||||||| ||||| || ||||| || | ||||| | |||| || |||| ||| Sbjct 261588 TTAAGAAGAAGGCCGACTGGGCTCTCCACTGGATCTCGGACAAG---CGCTCATCCTTCG 261532 Query 22487 CGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG 22546 | || ||||| || || ||||| | || |||||||||||||| |||||| | || || Sbjct 261531 CCGAGCGTCTCATCGCGTTTGCCGCCGTCGAAGGCATTTTCTTCTCTGGATCCTTCGCTG 261472 Query 22547 CAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA--AATGAGTT 22604 | ||||| ||||| || || || | | ||||| || || || ||||| || ||| | Sbjct 261471 CCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCTGGCCTCAC--TTTCAGCAACGAGCT 261414 Query 22605 AATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 || ||||| || ||||| | || ||||| || || || Sbjct 261413 CATCAGCCGTGACGAGGGCATGCACACCGACTTCGCCTG 261375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303332041309562