Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3 109 5e-19 seq250 95.1 1e-14 >seq3 Length=549351 Score = 109 bits (120), Expect = 5e-19 Identities = 240/351 (68%), Gaps = 23/351 (7%) Strand=Plus/Minus Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 |||||||||||| | | || ||||| || || ||| | || || ||||| || Sbjct 261535 TTCGCCGAGCGTCTCATCGCGTTTGCCGCCGTCGAAGGCATTTTCTTCTCTGGATCCTTC 261476 Query 46207 GCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265 || |||||||| | |||| || | ||||| ||||||| ||||| || || |||||||| Sbjct 261475 GCTGCCATCTTCTGGCTCAAGAAGCGAGGGC-TCATGCCTGGCCTCACTTTCAGCAACGA 261417 Query 46266 GCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCG 46325 ||| || || ||||||||| |||| || ||||| || || ||| || | || | Sbjct 261416 GCTCATCAGCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTC--CT-TTTCAGCCA 261360 Query 46326 CGTGCACGACAAGCTTGCGCCCGACACC-----GTGCTGAGCATGTTCA---AGGAGGCG 46377 | | | || |||||| ||||| || | ||| | ||| || || Sbjct 261359 CCTTC-------GCCGGCGCCC-ACACCCTGAGGTCGTACGCAAGATCATTGTCGATGCC 261308 Query 46378 GTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCC-CGCTGCCCTGCTGGGCATGAA 46436 || || || ||| ||||||| || |||| || || || ||| | || | |||||||| Sbjct 261307 GTCGCGATCGAGCAGGAGTTCTTAACGGATGCGCTCCCTTGCT-CGCTCATTGGCATGAA 261249 Query 46437 CGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGT 46487 |||| | |||||| | ||||||||||| || || ||||| |||||||| Sbjct 261248 CGCAAAACTCATGTGCCAATACATCGAGTTCGTTGCTGACCGCCTGCTCGT 261198 >seq250 Length=49273 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||| || || | || | ||||||||||| || |||||||| ||| | Sbjct 4979 CCACCGCGCAGACGGAGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 4920 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | | |||| ||||| ||||| || || ||| |||| | |||||||||||| |||||| Sbjct 4919 AAGCTGCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCGGGAGGG 4860 Query 131128 AT 131129 || Sbjct 4859 AT 4858 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||||||| || || | || | ||||||||||| || ||||| ||||| Sbjct 2417 CCACCACGCAAACGGAGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTATAATCCGAA 2358 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | | |||| ||||| ||||| || || ||| |||| | |||||||||||| |||||| Sbjct 2357 AGGCTGCGACCATCCTCAAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGG 2298 Query 131128 AT 131129 || Sbjct 2297 AT 2296 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||||| ||||| ||||| || || || Sbjct 6058 CCACCACGAAGACGAAGGACAAGGTGGAGCGTCGATTCCTTCTGAATATTATAGTCAGAA 5999 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | | | || ||||| ||||||||||| ||| |||| | |||||||||||| ||||| Sbjct 5998 AGGCTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGA 5939 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||| | | || | || || | ||||||| Sbjct 5938 ATTCCTTCCTTGTCCTGGATCTTTGACTTCACGTTGTCAATCGTGTCCGACGACTCGACC 5879 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || | || || || || |||||||| Sbjct 5878 TCCAAAGTGATCGTCTTCCCTGTCAACGTCTTGACAAAGATCTGCAT 5832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472005182893440