Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 120 4e-22 seq57 116 5e-21 seq277 114 2e-20 seq1111 109 7e-19 seq366 86.0 8e-12 >seq3 Length=549351 Score = 120 bits (132), Expect = 4e-22 Identities = 166/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| ||| ||| | |||||||| | || || | |||||| || ||||| Sbjct 261375 CAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTGAGG 261434 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| || || ||||| || ||||| || |||| || || |||||||| |||||| Sbjct 261435 CCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAGAAA 261494 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGCT-GTCATGT 32837 || ||||| || || ||||| || || || | ||| | | | ||||| ||| Sbjct 261495 ATGCCTTCGACGGCGGCAAACGCGATGAGACGCTCGGCGAAGGATGAGCGCTTGTCCGAG 261554 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887 ||||| | ||||||| ||||||||||| || || ||||| |||||||| Sbjct 261555 ATCCAGTGGAGAGCCCAGTCGGCCTTCTTCTTAACGCAAGGAATTGTCTC 261604 >seq57 Length=175691 Score = 116 bits (128), Expect = 5e-21 Identities = 236/348 (68%), Gaps = 2/348 (1%) Strand=Plus/Minus Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 || || || || |||||| | || || || | || || |||| | || || ||||| Sbjct 69049 AGGCCAATACCTCCTGCCGTCTTCGAAATCATAGCACACTGTTTGAGTGTGTCGTAGATC 68990 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA-CATTTGGTGACGACT 63465 ||||| || || || ||| ||||| | || || || | || ||| ||| | Sbjct 68989 CCCTCGATGCTGTCGTCCTTCATGCATACGAGGAAGCA-CGAGCTCATCTGGGGGTTGGG 68931 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||||||||| || | |||||| ||||| || || | || || | ||||| Sbjct 68930 AGTTCCCGCATTGAACATCGTAGGACTTGCGTGGGTGAAGAAGCGCTCGGACATGAGATT 68871 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || |||||||||||| || || || | |||||| || | ||||||||||| | Sbjct 68870 ATAGGTCTCAATAGCTCGTTCGATGTCGCGGCCATGAATACCAATAGCGACACGCATAAG 68811 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||||||||| ||||| || |||| ||| ||| || ||||| | |||||| || | Sbjct 68810 CATGTGCTGGGGTCTCTCCGCGATTTTGCCGTTAATCTTCAAAAGGTAGGAACGCTCGAG 68751 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||| || ||||| || || | ||| ||||| || ||||| || || Sbjct 68750 AGTCTTGAAACCGAAGTATTGGTAATGGAAGTCACGGTCGTAGATGAT 68703 >seq277 Length=43962 Score = 114 bits (126), Expect = 2e-20 Identities = 170/238 (71%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| |||||||| ||| | || ||||| | || || || ||||| ||| ||||| Sbjct 18604 ACACGCGAAATCCGTGTGCATCCCTTCGTCGCGGCTGATCAACTCGTTACTAAAGGTGAG 18545 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779 ||| ||||| | || ||||| || ||||| || |||| |||||| || || || || || Sbjct 18544 TCCTGGCATCAATCCCCGCTTCTTTAGCCAGAAGATGGCCGCAAAGGAACCCGAGAAAAA 18485 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGC--GCTGTCAT 32835 |||||||| || || || || || | | | ||||| ||| || | | ||||| Sbjct 18484 GATTCCTTCAACCGCAGCGAAAGCCACCAAACGTTCTCCG-AACGACGACCTGGTGTCAG 18426 Query 32836 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 |||||| | ||||| ||||||||||| || |||||||| || |||||||| || Sbjct 18425 ATATCCAACGAAGCGCCCACTCGGCCTTCTTCTTCACACAAGGGATCGTCTCTATCGC 18368 >seq1111 Length=1418 Score = 109 bits (120), Expect = 7e-19 Identities = 216/319 (68%), Gaps = 7/319 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || |||||||| || | ||||| |||| ||| || | ||| ||| |||||||||| Sbjct 377 CAAGCGAAATCTGTATGCATTCCCTCATCTCGACTGATGAGTTCATTGCTAAACGTGAGT 436 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| || || || ||||| ||||| || |||| || || || || || |||||| Sbjct 437 CCTGGCATAAGTCCCCGTTTTTTTAGCCAGAAGATGGCTGCGAAAGACCCCGAGAAGAAA 496 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-----GTCAT 32835 |||||||| || |||||||| || | || | || | || | || | ||| Sbjct 497 ATTCCTTCGACAGCCGCAAACGCGACGAGACGTTCAGCGAAA--GTCGATTCCTCGTCCG 554 Query 32836 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 32895 ||||| | ||||| || ||||| |||| || || | | |||||||||||| Sbjct 555 AAATCCATCGAAGTGCCCATTCAGCCTTTCTTTTAACGCATGATACTGTCTCTATAGCTG 614 Query 32896 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 32955 || ||| ||| || | |||| || ||||| ||||| | ||| ||| Sbjct 615 AGAATAGACGCGCCCGTTCTGTATTTTCTTGAATATATGCATCAAGGAGAAGCGAGTACG 674 Query 32956 TTTCCGAATGAATGTTTTC 32974 |||||||||| || ||||| Sbjct 675 TTTCCGAATGGATATTTTC 693 Score = 82.4 bits (90), Expect = 1e-10 Identities = 163/237 (69%), Gaps = 11/237 (5%) Strand=Plus/Plus Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041 || || || |||||||| || | || || | ||||| || || |||| || | || Sbjct 756 ATCTGGAAGCCGTAGAAACAACGTGCTTCTGCGATCTGCACCTCGCTACAGAACCTCTCG 815 Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA---AAAAACGCCAATACATGTTTT 33098 | | ||| ||||||||||| ||||| || |||| ||||| || | || || || Sbjct 816 ACAAGATTCTCATTCACTATCCCGTC---GGATGCAACGAAAAAAGCGAGAACGTGCTTG 872 Query 33099 ATAAAATATTTTTCGT-CTGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATAT 33154 || |||| ||| | | || | |||||| | |||||| ||||| || || | Sbjct 873 ATGAAATGACGTTCTTGATCGT-TGAGTTTATGCTGCCAATCCGCCATATCCTTCGAAAG 931 Query 33155 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 ||||| |||||| ||||||| || ||||||||| || || ||||| ||||| || Sbjct 932 ATCCATCTCTTCCGCTGTCCAGAAGCTTGCCTCTGCTTTCTTGTACATGTTCCATAT 988 >seq366 Length=28123 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||||||| |||||||| ||| || ||||||||||| | || ||| | ||| ||| Sbjct 25429 AACATCAAGCATGCGAAGTCGGTATGCAGACCCTCGTCCCGACAAATGAGTTCTTTGCTG 25370 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || || ||||| | || || || || ||| ||||||| | || || || || Sbjct 25369 AAAGTAAGACCTGGCATCAAACCGCGTTTCTTGAGCTAAAATATAGCTGCGAAGGAGCCC 25310 Query 32772 GAAAAGAAAATTCCTTCTAC 32791 || |||||| |||| ||||| Sbjct 25309 GAGAAGAAATTTCCCTCTAC 25290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633621774763600