Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1111 136 4e-27 seq3 116 4e-21 seq366 84.2 2e-11 >seq1111 Length=1418 Score = 136 bits (150), Expect = 4e-27 Identities = 171/234 (73%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||| ||||| ||||||||||| | ||||| | ||||||||| || | | || ||||| Sbjct 755 AATCTGGAAGCCGTAGAAACAACGTGCTTCTGCGATCTGCACCTCGCTACAGAACCTCTC 814 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 || ||||| ||||| ||||| || |||||||| | |||||||| | | ||||| || Sbjct 815 GACAAGATTCTCATTCACTATCCCGTCGGATGCAACGAAAAAAGCGAGAACGTGCTTGAT 874 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTA---TCCCAATCGGATAGATCTTTTGAAAGATC 93591 ||||| || | ||| || || ||| | |||||| | | ||| || |||||||| Sbjct 875 GAAATGACGTTCTTGATCGTTGAGTTTATGCTGCCAATCCGCCATATCCTTCGAAAGATC 934 Query 93592 GACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 | ||||| | ||||| || ||| |||||||| |||||||| | |||||| Sbjct 935 CATCTCTTCCGCTGTCCAGAAGCTTGCCTCTGCTTTCTTGTACATGTTCCATAT 988 >seq3 Length=549351 Score = 116 bits (128), Expect = 4e-21 Identities = 217/319 (68%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| || |||||||| || | || ||||| || || | ||| |||||||| || | Sbjct 261374 GCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTGAG 261433 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | || ||||| ||||||||||| || || | ||| || ||||| || || Sbjct 261434 GCCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAGAA 261493 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || ||||| ||||| ||||| || | | ||| ||||| || || | || Sbjct 261494 AATGCCTTCGACGGCGGCAAACGCGATGAGACGCTCGGCGAAGGATGAGCGCTTGTCCGA 261553 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 |||||| | | |||||| ||||| || ||||||| ||||| | ||| || | |||| Sbjct 261554 GATCCAGTGGAGAGCCCAGTCGGCCTTCTTCTTAACGCAAGGAATTGTCTCAACGGCGTC 261613 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 || ||||| || || | | | || |||||||| ||||| | || |||||| | Sbjct 261614 GAAAAGGTATTCGCGTTGAGCGGGGTCCTTGATGTATGTGTCGATGAGGAGCGAATACGT 261673 Query 93391 TTCAGAATGGACATTCTCC 93409 || || |||| |||||| Sbjct 261674 CTCGGAGTGGATGTTCTCC 261692 Score = 82.4 bits (90), Expect = 9e-11 Identities = 160/234 (68%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 |||||||||||| ||||| || | ||| |||| || ||||| | |||| ||| Sbjct 261748 AATTTGGAATCCATAGAAGCACCGAGCCTCCGCAGCTTGAACTTCGTTGCTGAATCGCTC 261807 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 || || || || || || ||||| ||||| || || || || || | | ||| | | Sbjct 261808 AACAAGGTTCTCGTTTACGATACCGTCGGACGCAGCGAAGAACGCAAGAACATGGCTGAC 261867 Query 93535 AAAATGTTTCTCATCATC-TTTAA--GCTTATCCCAATCGGATAGATCTTTTGAAAGATC 93591 || || ||| | || ||||| || | ||| ||| || || || |||||||| Sbjct 261868 GAAGTGGCGCTCGTTGTCGTTTAACTTGTTCTGCCAGTCGTGGAGGTCCTTGGAAAGATC 261927 Query 93592 GACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 | || ||| ||||||| ||||| ||||| || || |||||||| | ||| || Sbjct 261928 CATCTCCTCGGCAGTCCAGAACGAAGCTTCAGCCTTCTTGTACATTTGCCAAAT 261981 >seq366 Length=28123 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 || |||| ||||| || ||||||||||| | ||| ||||| || | || | || |||| Sbjct 25431 TGAACATCAAGCATGCGAAGTCGGTATGCAGACCCTCGTCCCGACAAATGAGTTCTTTGC 25372 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATAT 93186 |||| || | |||||| | || || |||||||||||| ||||||| Sbjct 25371 TGAAAGTAAGACCTGGCATCAAACCGCGTTTCTTGAGCTAAAATAT 25326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556851813658840