Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq123 111 3e-19 seq48 93.3 9e-14 seq3 86.0 1e-11 >seq123 Length=106487 Score = 111 bits (122), Expect = 3e-19 Identities = 236/350 (67%), Gaps = 2/350 (1%) Strand=Plus/Minus Query 218657 AGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGA 218716 ||||||| || || ||||||| | ||||||| ||| ||||||||||| || || | Sbjct 58972 AGGTCGCCCAATTAGTTGGTTATATCTCCGAAAAAGCTGCATACCATCACGGCGAACAAA 58913 Query 218717 GTCTGCAGGGTGCC-ATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 || || | | || | ||||| | || ||||| ||||| || ||||||||||||||| Sbjct 58912 GTTTG-ACGATGACTATTGTCAATCTCGCTCAGGATTATGTCGGAAGTAACAACATGAAC 58854 Query 218776 TTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCT 218835 || ||| | ||||||||||||| ||| |||| | || || ||||| ||||| Sbjct 58853 TTACTGTTGCCCAACGGTCAGTACGGTACTCGCGACGTTGGAGGCAAGGACCACGCTTCG 58794 Query 218836 GCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGAT 218895 || | || || || || || |||| | | ||| || ||| ||| | ||| Sbjct 58793 GCTCGTTACATTTTCACTGAGCCAGCGCCGATATCTCGCGCTGTCTTCCATCCTTCGGAT 58734 Query 218896 GATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTG 218955 ||| || || || || || | || |||||| | | |||| ||||||| ||| || Sbjct 58733 GATCCACTTCTCAATTACCTCAACGATGATGGTCAATGGGTTGAACCCGAGTATTATATG 58674 Query 218956 CCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGG 219005 || | | | || | | || || ||||| || | || || || ||||| Sbjct 58673 CCCGTTCTCCCTCTGGTCCTAGTCAATGGAGCGGAAGGCATTGGCACAGG 58624 >seq48 Length=185042 Score = 93.3 bits (102), Expect = 9e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 280251 GTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATC 280310 || |||||||| || ||| || || | |||||||||||||||||||||||||||||| Sbjct 41926 GTCTGGAAGCACCCGAACTTGGTCATCGGTTACGTCGCTCAGCACGCTTTCCACCACATT 41867 Query 280311 GAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGCAAGTGGGCAG 280370 || ||||| || |||| ||| ||| | | ||||| |||||| || | ||| || Sbjct 41866 GATAACCATCTCGACAAGACCCCTCTCGAGTACATGTTGTGGCGTTACCAGACTGGTGAG 41807 Query 280371 GATCTGGAG 280379 ||| ||||| Sbjct 41806 GATTTGGAG 41798 >seq3 Length=549351 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| |||||||| || ||||||| ||||||| | | ||||||||||| | ||| Sbjct 261389 GTGCATGCCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTGAGGCCAGGCATGAGCCC 261448 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 || ||| ||||||||||||| || |||||||||||||| Sbjct 261449 TCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAA 261490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027819798615731