Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq47 154 3e-32 seq250 140 6e-28 seq277 105 1e-17 seq3 102 2e-16 seq2 93.3 8e-14 seq48 89.7 9e-13 >seq47 Length=188066 Score = 154 bits (170), Expect = 3e-32 Identities = 348/513 (68%), Gaps = 10/513 (2%) Strand=Plus/Minus Query 268284 CATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGA 268343 |||| ||||| || || | || |||| || || | ||||||||| ||| ||||| | Sbjct 109965 CATGTCCCCAGTCACGTTGAGCATCCAAATTACCCAACGACAGGCATTCCTGTTTGCCCA 109906 Query 268344 -GCTTCACGCGTGCAAGACCGC--GAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTA 268400 ||| | | || |||||| | || || || || || ||||| ||| || | Sbjct 109905 AGCTGATCTCC-GC--GACCGCACGCGTAATCTTACGCGTAACGAAAGTCCGTCCTCTGC 109849 Query 268401 GAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGT 268460 | ||||||||||||||||| | || || ||||| ||| | | ||| |||||||| |||| Sbjct 109848 GCGGGCTCTCGTGGTTGAACAAAATCCCATTGCAGGCGTATACGCCGTATGCCTCGCGGT 109789 Query 268461 AGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGA 268520 |||||||| ||||||| || ||| ||| || |||||||| || || | | Sbjct 109788 AGTTCACGGTAATCCAGTACGCGTACAGCTTGGCGCACCCGTACGGACTGCGCGGGTAAA 109729 Query 268521 AGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATG 268580 | |||||| | | || || | || || || || | || ||||| || | Sbjct 109728 ACGGCGTCTTCTCGCTCTGCGGCGTCTCGACTACCTTACCGTACAGTTCGGACGTACTGG 109669 Query 268581 CTTGGTAGAA-CTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGA 268639 | |||||||| | | || | ||||| ||||| | | ||| || ||||| | || Sbjct 109668 CCTGGTAGAAGCGTACGTG-TCGCTCGAGCCCGCACGTCCTGATCGCGTCGAGGAGGCGG 109610 Query 268640 AGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGACA 268699 ||||| || | |||||| ||||| | |||||||||| ||| ||||| || || | |||| Sbjct 109609 AGAGTACCAAGGCCATCTACGTCACCCGTATACTCCGCCATTTCGAAGGAGACTTTGACA 109550 Query 268700 TGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGC-ACGATCTTCAC 268758 || |||||||| ||||| || ||||| | | || | | ||| | ||| | ||| Sbjct 109549 TGCGATTGGGCGCCGAGGTTGTAGACCTC-TGTAGGCTGCACAGATGCAAGGATGTACAC 109491 Query 268759 GAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTG 268791 ||| ||||| ||||| |||||| || || || Sbjct 109490 GAGATTCGTGCTGTCGGAGAGGTCCCCATAATG 109458 >seq250 Length=49273 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| ||||| || || || || || ||||| || || Sbjct 6058 CCACCACGAAGACGAAGGACAAGGTGGAGCGTCGATTCCTTCTGAATATTATAGTCAGAA 5999 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || | | ||||| || | |||||| || ||||| ||||| | || |||||||| ||| Sbjct 5998 AGGCTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGA 5939 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||||| ||| ||| || || ||||| | || || || Sbjct 5938 ATTCCTTCCTTGTCCTGGATCTTTGACTTCACGTTGTCAATCGTGTCCGACGACTCGACC 5879 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || || || | |||||||| || |||||||| Sbjct 5878 TCCAAAGTGATCGTCTTCCCTGTCAACGTCTTGACAAAGATCTGCAT 5832 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| | ||||||| ||||||| |||||||| |||| |||||| || ||| Sbjct 2237 CCTTCCTTGTCCTTAATCTTTTCCTTGACATTGTCGATGGTATCTGATGATTCAACCTCC 2178 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || || || || || ||||| ||||| ||||| ||||||||| Sbjct 2177 AGTGTAATAGTCTTGCCGGTGAGCGTCTTCACGAAAATCTGCATT 2133 Score = 89.7 bits (98), Expect = 9e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | |||||| || ||||| || || |||||||| ||||| Sbjct 2993 CCACCACGAAGGCGGAGGACAAGGTGTAGAGTCGACTCCTTCTGAATGTTATAGTCGGAA 2934 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||| | ||||| || | ||||| |||||||| ||||| | |||||||||||||| Sbjct 2933 AGTTGGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCGGGTGGG 2874 Query 68355 AT 68356 || Sbjct 2873 AT 2872 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||| || ||||||||| |||| || | || ||||| | || || || || Sbjct 1957 CCTTCCTTATCCTGAATCTTTTCCTTCACATTGTTTATAGTGTCGGAGGACTCCACCTCG 1898 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| ||||| ||||| ||||||||||| |||||||| Sbjct 1897 AGGGTGATGGTCTTTCCTGTGAGCGTCTTGACGAAGATCTGCAT 1854 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| |||||||| | ||||||| ||||| ||||| | ||||| || || Sbjct 5084 CCTTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTGTCGGACGATTCAACCTCA 5025 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||| || || || ||||| || || ||||| |||||||| Sbjct 5024 AGTGTGATAGTCTTGCCAGTGAGCGTTTTCACGAAGATCTGCAT 4981 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || ||||| || |||||||| | ||| || ||||| || |||| ||||| || ||| Sbjct 5370 CCCTCCTTATCCTGAATCTTCGACTTCACATTGTCGATCGTATCTGACGATTCGACCTCC 5311 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || || || ||||| ||||||||||| |||||||| Sbjct 5310 AAAGTGATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 5267 >seq277 Length=43962 Score = 105 bits (116), Expect = 1e-17 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 10622 CAGGTTCTCCATCACCATGCCATC-GCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGA 10680 || |||||| | || |||||||| | ||| |||||||| |||||| ||| |||||| Sbjct 18164 CAAGTTCTCGTTGACTATGCCATCCGATGCG-GCAAAGAACGCGAGGACGTGGCTGATGA 18106 Query 10681 AGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGA 10740 |||| || || |||||| ||| || |||||||| || ||| ||| | | || | | Sbjct 18105 AGTGACGTTCGTCATCGCTCAACTTGTCACGCCAATCACCCATATCTTTGGAAAGATCCA 18046 Query 10741 CCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCT 10785 | || ||| | |||||||||| || |||||||||||||||||| Sbjct 18045 CTTCTTCCGCTGTCCAGAAAGACGCTTCGGCCTTCTTGTACATCT 18001 >seq3 Length=549351 Score = 102 bits (112), Expect = 2e-16 Identities = 232/342 (68%), Gaps = 18/342 (5%) Strand=Plus/Plus Query 10070 GCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCATGCG 10129 ||||||||| |||||||||||||| |||| ||| || | | |||||||||||| | ||| Sbjct 261206 GCGGTCAGCAACGAACTCGATGTATTGGCACATGAGTTTTGCGTTCATGCCAATGA-GCG 261264 Query 10130 -GCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGATGC 10188 ||| |||| || || | ||| |||| ||| | ||||| || || ||| ||| Sbjct 261265 AGCAAGGGAGCGCATCCGTTAAGAACTCCTGCTCGATCGCGACGGCATC---GACAATGA 261321 Query 10189 TCTT---TACCACGTCAAGGGACAGCTTGTTCTCGA-----GCTTCGAATACAGGAGCTC 10240 |||| ||| || ||| ||| | | ||| ||| ||| | |||| Sbjct 261322 TCTTGCGTACGACCTCA-GGGTGTGGGCGCCGGCGAAGGTGGCT--GAAAA--GGAGGCA 261376 Query 10241 TCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACC 10300 | || | ||| | ||||||||| |||||||||| ||||||| ||| || || Sbjct 261377 GGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTGAGGCC 261436 Query 10301 GGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAG 10360 ||||||||||| || || |||||||| ||||| ||| || || ||||| | || Sbjct 261437 AGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAGAAAAT 261496 Query 10361 ACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA 10402 || || ||| | | |||| ||| ||||| |||||||| Sbjct 261497 GCCTTCGACGGCGGCAAACGCGATGAGACGCTCGGCGAAGGA 261538 >seq2 Length=791969 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| || || || | ||| || ||||||||||| | ||||| || || Sbjct 342812 CCTTCCTTGTCCTGGATTTTCGACTTAACATTGTCGATGGTGTCGGAGGATTCGACCTCG 342871 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| || |||||||||||||||||||| |||||||| Sbjct 342872 AGAGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 342915 >seq48 Length=185042 Score = 89.7 bits (98), Expect = 9e-13 Identities = 144/205 (70%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||| ||||||| | |||||| |||| || ||||| ||||| ||||||||| Sbjct 41820 TAACGCCACAACATGTACTCGAGAGGGGTCTTGTCGAGATGGTTATCAATGTGGTGGAAA 41879 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGC--CCCGAG 225095 || ||||| || ||||| | ||| || ||| || |||||||| || | ||| | Sbjct 41880 GCGTGCTGAGCGACGTAACCGATGACCAAGTTCGGGTGCTTCCAGACCTCACCACCCTTG 41939 Query 225096 TCGG-TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154 | || || | || ||| || | ||||| |||||| | ||| || | ||| || || Sbjct 41940 TTGGCTTCAGTGTCACCGACAAGCAACTTGACGAGCGTCGACTTTCCGGAACCGTTAGGA 41999 Query 225155 CCAATCACGCCAATCCGGGATGACA 225179 |||| ||| ||| || || |||| Sbjct 42000 CCAAGGACGGCAACACGAGACGACA 42024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921607527318520