Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq250 96.9 3e-15 >seq250 Length=49273 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 ||| || || || || |||||| ||||||||||||| ||||| |||||||| ||||| || Sbjct 5987 ATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTT 5928 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| |||||| || | | |||| ||||| | || ||||| |||| || | Sbjct 5927 GTCCTGGATCTTTGACTTCACGTTGTCAATCGTGTCCGACGACTCGACCTCCAAAGTGAT 5868 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || || |||| || || ||||| |||||||| Sbjct 5867 CGTCTTCCCTGTCAACGTCTTGACAAAGATCTGCAT 5832 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || || |||||||| ||| || | ||| ||| ||||| |||||||| Sbjct 4950 CGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGCTGCGACCATCCTCAAGCTGTTTACC 4891 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGC 114279 |||| ||||||||||||| ||||| ||||| |||| Sbjct 4890 AGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGC 4856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420127789579092