Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 214 3e-50 seq277 140 6e-28 seq57 93.3 8e-14 seq1111 86.0 1e-11 seq366 84.2 4e-11 >seq3 Length=549351 Score = 214 bits (236), Expect = 3e-50 Identities = 354/498 (71%), Gaps = 25/498 (5%) Strand=Plus/Minus Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCG-T 42595 |||||| | ||||| ||| ||| | || || |||| |||||| ||| |||| | Sbjct 261691 GAGAACATCCACTCCGAGACGTATTCGCTCCTCATCGACACATACATCAAGGACCCCGCT 261632 Query 42596 CGA-GCGTA-ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653 | | ||| | || || ||| | ||| | ||||| || || ||| | ||||||||||| Sbjct 261631 CAACGCGAATAC---CTTTTCGACGCCGTTGAGACAATTCCTTGCGTTAAGAAGAAGGCC 261575 Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||||||| ||| |||||||| | | | | | || | |||| |||| | || | || Sbjct 261574 GACTGGGCTCTCCACTGGATCTCG-GACAAGCGCTCATCCTTCGCCGAGCGTCTCATCGC 261516 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 ||| |||||||||| ||||| |||||||| || ||||||| |||||||||||||||| Sbjct 261515 GTTTGCCGCCGTCGAAGGCATTTTCTTCTCTGGATCCTTCGCTGCCATCTTCTGGCTCAA 261456 Query 42773 GCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || ||| || ||||| || ||||| ||| ||||| ||||||||| | ||||||| Sbjct 261455 GAAGCGAGGGCTC-ATGCCTGGCCTCACTTTCAGCAACGAGCTCATCAGCCGTGACGAGG 261397 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAG-----GCACAAGCC 42886 | |||| | ||||| ||||||||||| ||| |||||||| | || || || Sbjct 261396 GCATGCACACCGACTTCGCCTGCCTCCTTTTC---AGCCACCTTCGCCGGCGCCCACACC 261340 Query 42887 CTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCT 42946 || ||| || || ||||| || ||||| | ||||||| |||||||| | Sbjct 261339 CT-----GAGGTCGTACGCAAGATCATTGTCGATGCCGTCGCGATCGAGCAGGAGTTCTT 261285 Query 42947 CACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACA 43005 ||| | |||| ||| || || || | ||||||||| | ||||||||| | |||| Sbjct 261284 AACGGATGCGCT-CCCTTGCTCGCTCATTGGCATGAACGCAAAACTCATGTGCCAATACA 261226 Query 43006 TCCAGTACGTCGCCGACC 43023 || ||| ||| || |||| Sbjct 261225 TCGAGTTCGTTGCTGACC 261208 >seq277 Length=43962 Score = 140 bits (154), Expect = 6e-28 Identities = 288/421 (68%), Gaps = 17/421 (4%) Strand=Plus/Plus Query 42617 GGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA 42676 ||| || |||||||| || || | ||||||||||| || |||||||| ||||| Sbjct 18367 GGCGATAGAGACGATCCCTTGTGTGAAGAAGAAGGCCGAGTGGGCGCTTCGTTGGATATC 18426 Query 42677 GAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCT 42735 | | | | | | ||||||| || | |||| || || | || || || || |||| Sbjct 18427 T-GACACCAGGTCGTCGTTCGGAGAACGTTTGGTGGCTTTCGCTGCGGTTGAAGGAATCT 18485 Query 42736 TCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGAC 42795 | |||||||| |||| || ||||||||||||| ||| || || | |||||| |||| Sbjct 18486 TTTTCTCGGGTTCCTTTGCGGCCATCTTCTGGCTAAAGAAGCGGGGATTGATGCCAGGAC 18545 Query 42796 TCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCC 42855 ||||||| ||||| | |||||| | ||||| ||| |||| | ||| || || || | Sbjct 18546 TCACCTTTAGTAACGAGTTGATCAGCCGCGACGAAGGGATGCACACGGATTTCGCGTGTC 18605 Query 42856 TCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG-----GTCCGGGCCAT 42910 |||| ||| | || || | | | |||| | | |||| | || || Sbjct 18606 TCCTTTTC---CGTCATCTTCGAC-GACGCCC----AAGTGCGGCCACAATTTTGGATAT 18657 Query 42911 CATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCT 42970 ||| |||| ||||| ||||||| |||| ||||| ||| | | | |||||||| || Sbjct 18658 CATTGCGGACGCCGTCTTGATCGAGCAGGAATTCCTTACGGATGCATTACCCGTGTCTCT 18717 Query 42971 GGTCGGCATGAA-CCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCC 43029 | || ||||| | ||| ||||||||| | |||||| ||| ||| || || | ||| | Sbjct 18718 CATTGGGATGAATTCTCGA-CTCATGTGCCAATACATCGAGTTCGTAGCGGATCGTCTGC 18776 Query 43030 T 43030 | Sbjct 18777 T 18777 >seq57 Length=175691 Score = 93.3 bits (102), Expect = 8e-14 Identities = 178/261 (68%), Gaps = 10/261 (4%) Strand=Plus/Minus Query 243886 CTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGA 243945 |||||||||| | ||| | | || || |||||||| || || | ||||||||| Sbjct 70627 CTGGCTCTGGCAAATGAATGCACCACGATCAGCGGCCATATCGAGGATCTTCTTCTGAGA 70568 Query 243946 TATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTG 244005 ||||| | | ||||||||||| | ||||| | || |||| |||| | ||||| Sbjct 70567 GATCTCCCAGACAGTCTTGTAGATCGCCTTGATATCGTCAGGGATGCCTTGAACATTCTG 70508 Query 244006 CACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCG 244065 ||| || || ||||| | |||| || ||||||| || |||| ||| ||||||| | Sbjct 70507 CACGGACCCGTTGTGCGCAATGATGAGGTTGCGCATCTTCTCGTCCCAAAGGCCCAGCTG 70448 Query 244066 CTCCAGCGCCTCGA-----CCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACG 244120 ||| | | ||| ||| | || | || ||||| |||||||| |||| || Sbjct 70447 GACCA-AGTCACGAAGTAGCCAAGGGCAT----ACGACCTGGAACTCTCCAGACAAAACA 70393 Query 244121 CGGCGCTGGTAGAGGTTGCTG 244141 || || ||||| ||||||| Sbjct 70392 CGACGAGAGTAGATGTTGCTG 70372 >seq1111 Length=1418 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 || || || ||| | || ||||| || || ||||||||||| | ||||| |||||||| Sbjct 525 CTCGTCGCGTTTGCGGCTGTCGAAGGAATTTTCTTCTCGGGGTCTTTCGCAGCCATCTTC 466 Query 42765 TGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 ||||| || | | || | | ||||| |||||||| || || ||||||||||| | Sbjct 465 TGGCT-AAAAAAACGGGGACTTATGCCAGGACTCACGTTTAGCAATGAACTCATCAGTCG 407 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTT 42862 || ||||| |||||| || || || ||||| || || Sbjct 406 AGATGAGGGAATGCATACAGATTTCGCTTGCCTTCTATT 368 >seq366 Length=28123 Score = 84.2 bits (92), Expect = 4e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 || |||| || || ||| || ||||| | |||||||||||| ||||||| | || | Sbjct 25270 GGTTGGTCGCTTTCTCCGAGGTAGAGGGAAATTTCTTCTCGGGCTCCTTCGCAGCTATAT 25329 Query 42763 TCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 | | ||||||| | | | |||||| || || || ||| || |||||||| | Sbjct 25330 TTTAGCTCAAGAAACGCGGTTTGATGCCAGGTCTTACTTTCAGCAAAGAACTCATTTGTC 25389 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 |||||||||| ||||||| ||||| || ||| | ||||| Sbjct 25390 GGGACGAGGGTCTGCATACCGACTTCGCATGCTTGATGTTC 25430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944323960726160