Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq250 122 2e-22 seq2 89.7 1e-12 >seq250 Length=49273 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | ||| || || || | ||| ||| || || ||||||||||| Sbjct 6061 TGACCACCACGAAGACGAAGGACAAGGTGGAGCGTCGATTCCTTCTGAATATTATAGTCA 6002 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || | ||||| || || | || || || |||||||| |||||||| || Sbjct 6001 GAAAGGCTTCGTCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGA 5942 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || |||||||| || | |||||||| || || | || ||| || Sbjct 5941 GGAATTCCTTCCTTGTCCTGGATCTTTGACTTCACGTTGTCAATCGTGTCCGACGACTCG 5882 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | |||||||||||||| |||| |||||||| || |||||||| Sbjct 5881 ACCTCCAAAGTGATCGTCTTCCCTGTCAACGTCTTGACAAAGATCTGCAT 5832 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || ||||||||||| |||| ||||||||| || || | ||| || || || || Sbjct 5651 CCCTCCTTATCCTGGATCTTCGATTTCACGTTGTCGATCGTATCCGAAGACTCGACCTCC 5592 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||||||| || || |||||||||||||| |||||||| Sbjct 5591 AGCGTGATCGTCTTACCAGTGAGAGTCTTGACGAAGATCTGCAT 5548 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| ||||||||||| || || || || || || |||| || || || || ||| Sbjct 2809 CCTTCCTTATCCTGGATCTTTGCCTTGACTTTATCAATAGTGTCATCGGACTCGACCTCG 2750 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||||| ||||| ||||| || ||||| ||||||||||||||| Sbjct 2749 AGCGTGATTGTCTTGCCGGTGAGCGTCTTCACGAATATCTGCATT 2705 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| |||||||||| ||| ||||| || ||||||||||||| Sbjct 2705 TCCACCACGCAGACGAAGAACGAGATGAAGGGTGGACTCTTTCTGAATATTATAGTCGGA 2646 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTG 288356 || |||||| || || | ||| ||||| |||||||| || || ||||| Sbjct 2645 AAGTTGGCGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGTTGTTG 2595 >seq2 Length=791969 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||||||||||| || || || || || | ||| ||||| || ||| Sbjct 342812 CCTTCCTTGTCCTGGATTTTCGACTTAACATTGTCGATGGTGTCGGAGGATTCGACCTCG 342871 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||||||| || || ||||||||||| |||||||| Sbjct 342872 AGAGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 342915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179634887410298