Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq277 89.7 6e-13 seq3 87.8 2e-12 seq1111 86.0 7e-12 >seq277 Length=43962 Score = 89.7 bits (98), Expect = 6e-13 Identities = 172/250 (69%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 126101 AGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAG 126160 ||||||||||| | ||||||||||| | |||||| || || ||| ||||||||||| Sbjct 18546 AGTCCTGGCATCAATCCCCGCTTCTTTAGCCAGAAGATGGCCGCAAAGGAACCCGAGAAA 18487 Query 126161 AAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTG 126220 |||||||| || || ||||| || | | ||| || | || || |||| | ||| Sbjct 18486 AAGATTCCTTCAACCGCAGCGAAAGCCACCAAACGTTCTCCGAACGA---CGACCTGGTG 18430 Query 126221 TCA---AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATC 126277 ||| | ||| | |||||||| ||||| |||| | ||| |||| |||| ||| Sbjct 18429 TCAGATATCCAACGAAGCGCCCACTCGGCCTTCTTCTTCACACAAGGGATCGTCTCTATC 18370 Query 126278 GCTTCAAAGAGTTCCT-TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGA 126336 || ||| |||| | ||| ||| | ||||||||||| || ||||| || Sbjct 18369 GCCGAAAAAAGTTGATCTCTAGTCT-CTTTCTCTTTGATGTAGGAGTCGATGAGGAGAGA 18311 Query 126337 ATATGTTTCG 126346 ||| || ||| Sbjct 18310 ATAAGTCTCG 18301 >seq3 Length=549351 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||||||| |||||| || || ||| || || |||||||| || |||||| Sbjct 261396 CCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTGAGGCCAGGCATGAGCCCTCGCTTC 261455 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || ||| || || || |||||||| || || || || || ||| Sbjct 261456 TTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAGAAAATGCCTTCGACGGCGGCAAAC 261515 Query 126185 GCAAAGAGACGCTCAGCAAAGGA 126207 || | ||||||||| || ||||| Sbjct 261516 GCGATGAGACGCTCGGCGAAGGA 261538 >seq1111 Length=1418 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 ||||| || || |||||||||||| || ||||||||||| || ||||| || Sbjct 398 CCCTCATCTCGACTGATGAGTTCATTGCTAAACGTGAGTCCTGGCATAAGTCCCCGTTTT 457 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || || || || ||||||||||| ||||| || ||| ||| ||| Sbjct 458 TTTAGCCAGAAGATGGCTGCGAAAGACCCCGAGAAGAAAATTCCTTCGACAGCCGCAAAC 517 Query 126185 GCAAAGAGACGCTCAGCAAA 126204 || | |||||| ||||| || Sbjct 518 GCGACGAGACGTTCAGCGAA 537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597343960206280