Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq250 104 2e-17 >seq250 Length=49273 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | ||||||||| || ||||| || || || | | | | || | || Sbjct 6044 AAGGACAAGGTGGAGCGTCGATTCCTTCTGAATATTATAGTCAGAAAGGCTTCGTCCATC 5985 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| || | ||||| |||||||||||||||||||||||||| || || Sbjct 5984 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTC 5925 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACG 64408 || || ||| ||| || || | || | ||| || || || || | ||| | Sbjct 5924 CTGGATCTTTGACTTCACGTTGTCAATCGTGT--CCGACGACTCGACCTCCAAAGTGATC 5867 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || ||||| || || || || || ||||| Sbjct 5866 GTCTTCCCTGTCAACGTCTTGACAAAGATCTGCAT 5832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499636736982040