Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq57 113 4e-20 seq3 95.1 1e-14 >seq57 Length=175691 Score = 113 bits (124), Expect = 4e-20 Identities = 246/364 (68%), Gaps = 6/364 (2%) Strand=Plus/Minus Query 147199 GCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGAC 147258 |||| || || || | | |||| || | |||||| || |||||||||| ||| || Sbjct 69070 GCGCGGATGCAATGGATGTTCAGGCCAATACCTCCTGCCGTCTTCGAAATCATAGCACAC 69011 Query 147259 TCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACAC 147318 | | | || | |||||| || ||||||||||| ||||| |||||| ||||| ||| Sbjct 69010 TGTTTGAGTGTGTCGTAGATCCCCTCGATGCTGTCGTCCTTCATGCATACGAGGAAGCAC 68951 Query 147319 GAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGA-- 147376 || | ||| ||||| || ||||| |||| ||| || || ||||| |||| Sbjct 68950 GAGCTCATCTGGGGGTTGGGAGTTCCCGCATTGAACATCGTAGGACTTGCGTGGGTGAAG 68891 Query 147377 ACGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAA 147436 | | || | || ||| | | ||| || ||||| || | | ||| ||| |||| Sbjct 68890 AAGCGCTCGGA--CATGAGATTATAGGTCTCAATAGCTCGTTCGATGTCGCGGCCATGAA 68833 Query 147437 TGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTT 147496 | | | ||||| ||||| |||||||||||||||| ||||| || | | || | | Sbjct 68832 TACCAATAGCGACACGCATAAGCATGTGCTGGGGTCTCTCCGCGATTTTGCCGTTAATCT 68773 Query 147497 TTAATAGATATCCATTGGTC-AGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTG 147555 | || || || | | || ||||| |||||||| ||||| | ||| | | |||| | | Sbjct 68772 TCAAAAGGTA-GGAACGCTCGAGAGTCTTGAAACCGAAGTATTGGTAATGGAAGTCACGG 68714 Query 147556 TTGT 147559 | || Sbjct 68713 TCGT 68710 >seq3 Length=549351 Score = 95.1 bits (104), Expect = 1e-14 Identities = 228/342 (67%), Gaps = 11/342 (3%) Strand=Plus/Minus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192 ||||| ||| | ||||| || ||| |||||| ||| | |||||||| || ||| || Sbjct 261532 GCCGAGCGTCTCATCGCGTTTGCCGCCGTCGAAGGCATTTTCTTCTCTGGATCCTTCGCT 261473 Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252 || || || | | || | ||| | ||||| |||||||| || ||||||||||| Sbjct 261472 GCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCTGGCCTCACTTTCAGCAACGAGCTC 261413 Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC---TACTACAACACTAG- 47308 ||| | ||||| ||| |||||||| |||| ||||| ||| | | | || | | Sbjct 261412 ATCAGCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTCCTTTTCAGCCACCTTCGC 261353 Query 47309 AGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCAT 47368 | || || | | || || ||| || | || ||| ||| |||||||| || Sbjct 261352 CGGCGCCCACACCCT-GAGGT------CGTACGCAAGATCATTGTCGATGCCGTCGCGAT 261300 Query 47369 TGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGAT 47428 ||| |||||| || | || || || || || | | || |||||||| | | Sbjct 261299 CGAGCAGGAGTTCTTAACGGATGCGCTCCCTTGCTCGCTCATTGGCATGAACGCAAAACT 261240 Query 47429 GATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT 47470 ||| | | |||||||| || || || |||||||||||||| Sbjct 261239 CATGTGCCAATACATCGAGTTCGTTGCTGACCGCCTGCTCGT 261198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475493126605840