Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq70 93.3 5e-14 seq3 91.5 2e-13 >seq70 Length=160523 Score = 93.3 bits (102), Expect = 5e-14 Identities = 274/413 (66%), Gaps = 11/413 (3%) Strand=Plus/Plus Query 12790 CGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGC 12847 ||||||| |||||||| || |||||| |||| || || || || ||||| | | Sbjct 19446 CGAAGCCGTCCATCTCGACCAGGAGTTGGTTGAGCGTGGACTCGCGCTCGTCATTTCCAC 19505 Query 12848 GGGCA-TACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGA 12906 | | |||||||| | | ||| || |||| ||||| |||||||| | ||| | || Sbjct 19506 CGAAACTACCACCCTTCCCTCTTTGTTTCCCGATCGCGTCGATTTCGTCGACGAAGATGA 19565 Query 12907 TACACGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 12965 | |||||| ||| ||| | | | | |||| || ||||| | | | ||| ||| Sbjct 19566 TGCACGGTGCATTCTTCTTAGCCGAGG-CGAAGAGGTCACGCACACGCGAAGGACCCACA 19624 Query 12966 CCCACAAACATCTCCACAAAATTGGCGGCGGA-ACATTGGATGAAGGGGACGTTGGATTC 13024 || |||||||||||||| || | || | || ||| | |||||| ||||| | || Sbjct 19625 CCAACAAACATCTCCACGAACTCGGAACCAGAGACA-GACAAGAAGGGCACGTTCGCCTC 19683 Query 13025 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGC 13084 || || | ||| ||| || || ||||| || || || || |||| || | ||| Sbjct 19684 TCCAGCCGTCGCTTTGGCCAGAAGCGTCTTACCAGTACCAGGAGGGCCCGAAAGGATGGC 19743 Query 13085 ACCACGTGGGATCCTGGCACC--ACTTCCAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCC 13142 ||| || || || |||| || |||| | || || |||||| || | || | | Sbjct 19744 ACCTCGAGGTATTTTGGCGCCCAACTTTTCA--TAACGAGCGGGTTCCTTCAAGAATTGC 19801 Query 13143 ACGATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGTCACTGAA 13195 |||| || | || |||||||| |||| |||||| | || |||| ||| Sbjct 19802 ACGAACTCCATGATCTCTTCCTTCGCCTCGTCCATGCCTGCCACATCACCGAA 19854 >seq3 Length=549351 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||||||| |||||| || || ||| || || |||||||| || |||||| Sbjct 261396 CCCTCGTCACGGCTGATGAGCTCGTTGCTGAAAGTGAGGCCAGGCATGAGCCCTCGCTTC 261455 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || ||| || || ||||||||||| || || || || || ||| Sbjct 261456 TTGAGCCAGAAGATGGCAGCGAAGGATCCAGAGAAGAAAATGCCTTCGACGGCGGCAAAC 261515 Query 127658 GCAAATAGACGCTCGGCAAAGGA 127680 || | ||||||||||| ||||| Sbjct 261516 GCGATGAGACGCTCGGCGAAGGA 261538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613497299527560