Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq250 152 1e-31 seq717 89.7 1e-12 seq18 87.8 4e-12 seq2 84.2 5e-11 >seq250 Length=49273 Score = 152 bits (168), Expect = 1e-31 Identities = 167/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||||||||||| ||||| ||||| || | || ||||||| |||| | Sbjct 6052 CGAAGACGAAGGACAAGGTGGAGCGTCGATTCCTTCTGAATATTATAGTCAG--AAAGGC 5995 Query 199469 CT--TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTC 199526 | |||||| || |||||||| || ||||||||||||||||||||||| ||| ||||| Sbjct 5994 TTCGTCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTC 5935 Query 199527 CTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| ||||| |||||| ||||||| || | ||||| | | || || |||| Sbjct 5934 CTTCCTTGTCCTGGATCTTTGACTTCACGTTGTCAATCGTGTCCGACGACTCGACCTCCA 5875 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||||||||| || || | || || ||||| || || Sbjct 5874 AAGTGATCGTCTTCCCTGTCAACGTCTTGACAAAGATCTG 5835 Score = 113 bits (124), Expect = 1e-19 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| ||||||||||| |||| ||||||||| | ||| | | ||||| Sbjct 4964 AGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGCTGCGACCATCC 4905 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 || ||||| || || ||||||||||||||||||||||| ||| Sbjct 4904 TCAAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCGGGA 4863 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/112 (80%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||| |||||||||||||| || | ||| ||||| | ||||| Sbjct 2987 CGAAGGCGGAGGACAAGGTGTAGAGTCGACTCCTTCTGAATGTTATAGTCGG--AAAGTT 2930 Query 199469 --CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| || || |||||||||||||||||||| ||||| ||||| || Sbjct 2929 GGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCGGG 2878 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/104 (81%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC--CTTCCAT 199475 |||||||||||||| ||||||||||| |||| ||| || || | |||| | | |||| Sbjct 2402 AGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTATAATCCG--AAAGGCTGCGACCAT 2345 Query 199476 CTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 | || ||||| || || |||||||| |||||||||||||| ||| Sbjct 2344 CCTCAAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGA 2301 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || |||||||| || ||||| |||| |||||||| | | | | | ||||| Sbjct 5250 AGGACGAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGACTGCGGCCATCC 5191 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||||||||||||||| || ||||||||||| || Sbjct 5190 TCAAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGG 5150 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/104 (80%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC--CTTCCAT 199475 ||||||||||| ||||||||||| || || | ||| ||||| | |||| | |||| Sbjct 2117 AGGACAAGGTGCAGAGTCGACTCTTTCTGAATGTTATAGTCGG--AAAGCTGGCGACCAT 2060 Query 199476 CTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 | || ||||||||||| || ||||||||||| |||||||| ||| Sbjct 2059 CCTCGAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCGGGA 2016 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| ||||| |||||||| |||| ||||||||| | | | | | || || Sbjct 5815 AGGACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGACTGCGACCGTCC 5756 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 |||| ||||| ||||||||||| | |||||||| || || Sbjct 5755 TCCAATTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCAGG 5715 >seq717 Length=5816 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| || |||||||| || ||||| |||| ||||||||| | | | | | ||||| || Sbjct 4603 GACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGACTGCGGCCATCCTC 4662 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 |||||||||||||| |||||||| ||||| ||||| || Sbjct 4663 GAGCTGCTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGG 4701 >seq18 Length=246705 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || ||||| || ||||||||||||| ||||||||| | | || | ||||| Sbjct 93568 AGGACGAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAGAGAGAACGACCATCC 93627 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || || ||||| || |||||||| || ||||||||||| || Sbjct 93628 TCAAGTTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGG 93668 >seq2 Length=791969 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| | ||||||||||| |||| ||||||||||| | || | ||| || Sbjct 342650 AGGACGAGGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGAGCGTCCGTCC 342709 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || || ||||| |||||||| || | ||||||||||| || Sbjct 342710 TCGAGTTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGG 342750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178902099531497